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[187923_s_at] protein kinase

Description Y39G8C.2 /REP_DB=WormBase Gene ID /WP=CE20236 /GB=CAC35855.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 85      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.9
(-3)
A 		2.2
(-0.7)
A 		2.2
(-0.7)
A 		2.7
(3)
A 		1
B 2.8
(-0.1)
A 		4
(3)
A 		2
(-2.2)
A 		1.7
(-3)
A 		2
C 2
(-3)
A 		3.7
(3)
A 		2.5
(-1.2)
A 		2
(-3)
A 		2
avr 2.2
(-2.5) 		3.3
(3) 		2.2
(-2.5) 		2.1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.2
(0.2)
A 		1.8
(-3)
A 		1.9
(-2.8)
A 		4.4
(3)
A 		2.3
(-1.8)
A 		4.2
(2.5)
A 		3
B 1.6
(-3)
A 		2.1
(-1)
A 		1.9
(-1.8)
A 		3.1
(3)
A 		1.6
(-3)
A 		2.1
(-1)
A 		2
C 2
(-2.1)
A 		1.9
(-2.4)
A 		1.7
(-3)
A 		2.9
(0.4)
A 		3.6
(2.4)
A 		3.8
(3)
A 		2
avr 2.3
(-1.2) 		1.9
(-2.6) 		1.8
(-3) 		3.5
(3) 		2.5
(-0.5) 		3.4
(2.6) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(3)
A 		0.5
(-1)
A 		0.6
(1)
A 		0.4
(-3)
A 		0
B 0.9
(2)
A 		1
(3)
A 		0.5
(-2)
A 		0.4
(-3)
A 		1
C 0.7
(-0)
A 		1.1
(3)
A 		0.9
(1.5)
A 		0.3
(-3)
A 		1
avr 0.8
(1.8) 		0.9
(3) 		0.7
(0.6) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.6
(-1.3)
A 		0.7
(-0.4)
A 		0.4
(-3)
A 		1.1
(3)
A 		0.7
(-0.4)
A 		1
(2.1)
A 		1
B 0.6
(-0)
A 		0.7
(1.5)
A 		0.4
(-3)
A 		0.8
(3)
A 		0.6
(-0)
A 		0.8
(3)
A 		0
C 0.7
(-1)
A 		0.6
(-1.7)
A 		0.4
(-3)
A 		0.6
(-1.7)
A 		1.2
(2.3)
A 		1.3
(3)
A 		1
avr 0.6
(-1) 		0.7
(-0) 		0.4
(-3) 		0.8
(1) 		0.8
(1) 		1
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187923_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3606
Sequence Type Exemplar sequence
Representative Public ID Y39G8C.2 NCBI
Target Description Y39G8C.2 /REP_DB=WormBase Gene ID /WP=CE20236 /GB=CAC35855.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064545(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064545 NCBI Caenorhabditis elegans Y39G8C.2 (Y39G8C.2) mRNA, complete cds. 11/11 None
SNAP00000006827 ENSEMBL cdna:SNAP chromosome:CEL140:II:14095500:14096581:-1 11/11 None
GENEFINDER00000006830 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14088922:14097281:-1 11/11 None
Y39G8C.2 ENSEMBL cdna:known chromosome:CEL140:II:14095354:14097281:-1 gene:Y39G8C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14095496-14097278(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl Y39G8C.2
Entrez Gene 175061 Entrez gene
SwissProt Q9BHK8 EMBL-EBI
WormBase CE20236 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T26775 hypothetical protein Y39G8C.c - Caenorhabditis elegans 0.0
blast CAC35855 Hypothetical protein Y39G8C.2 [Caenorhabditis elegans] ref|NP_496946.1| Y39G8C.2 [Caenorhabditis elegans] 1.0E-139
blast T26775 hypothetical protein Y39G8C.c - Caenorhabditis elegans 1.0E-139
blast CAC35855 Hypothetical protein Y39G8C.2 [Caenorhabditis elegans] ref|NP_496946.1| Y39G8C.2 [Caenorhabditis elegans] 1.0E-138
blast CAB02266 Hypothetical protein C27D8.1 [Caenorhabditis elegans] emb|CAB05633.1| Hypothetical protein C27D8.1 [Caenorhabditis elegans] ref|NP_502428.1| C27D8.1 [Caenorhabditis elegans] 1.0E-115
blast CAC35855 Hypothetical protein Y39G8C.2 [Caenorhabditis elegans] ref|NP_496946.1| Y39G8C.2 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-11
Pfam IPR000719 EMBL-EBI Protein kinase 4.2E-24
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 5.2E-11
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 4.0E-6
Sequence
Target Sequence 
>C. ELEGANS:187923_S_AT
ttgcaattctgaagctcgtgggcgccggcaagcacttcacccagatcgtggatcgtggca
agaaggacaaggagggatacttcttcctggtcatggaacttgtcggcaagagtctgggcg
atttgaaaaacgagcgagccgaacgggtcttctcgttcgggacgggactcggagttgcga
gtcaatgcttggaggcggtcgaggatttgcacaggacaggcttcatccatcgcgacctga
agcctcagaactatgcgtgtgggcttgatgagaaacgccacaacatttatatcctggatt
ttgggattgccaggaaatatttgaacaccaagaacgagctgaagacgccgagagaggccg
tgggattcaagggtaccgtccgtttcgctccactcgcatgccaccgtttcaccgagctgg
gtccccgagacgactgtgagagttggttctacctgctgctcgacttgatccttccgagag
gtctcccgtggcgtaagatgaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAATTCTGAAGCTCGTGGGCGC 687 701 221 Antisense
CACTTCACCCAGATCGTGGATCGTG 290 197 253 Antisense
AGGAGGGATACTTCTTCCTGGTCAT 161 57 290 Antisense
CCTGGTCATGGAACTTGTCGGCAAG 123 267 306 Antisense
AACGAGCGAGCCGAACGGGTCTTCT 342 139 349 Antisense
GTCAATGCTTGGAGGCGGTCGAGGA 249 463 401 Antisense
TTGCACAGGACAGGCTTCATCCATC 338 703 427 Antisense
GAAACGCCACAACATTTATATCCTG 233 357 492 Antisense
GAGGCCGTGGGATTCAAGGGTACCG 268 403 574 Antisense
CGACTTGATCCTTCCGAGAGGTCTC 182 253 681 Antisense
GGTCTCCCGTGGCGTAAGATGAACG 633 497 700 Antisense
Sequence Source Affymetrix Proprietary Database