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[187922_at]

Description K09C4.3 /REP_DB=WormBase Gene ID /WP=CE04731 /GEN=hsp-2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=heat shock protein
Cluster 6grp_total > 93      4grp_total > 05      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 28.7
(-3)
A 		57.9
(-0.2)
A 		29.8
(-2.9)
A 		90.3
(3)
A 		62
B 12.7
(-3)
A 		13.3
(-2.9)
A 		77.3
(3)
M 		76.1
(2.9)
A 		65
C 104.9
(3)
A 		48
(-1)
A 		27.9
(-2.4)
A 		18.7
(-3)
A 		86
avr 48.8
(-0.5) 		39.7
(-3) 		45
(-1.6) 		61.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 52.8
(2.3)
A 		3.9
(-3)
A 		26.2
(-0.6)
A 		27.3
(-0.5)
A 		59.2
(3)
A 		11.2
(-2.2)
A 		55
B 36.3
(1.2)
A 		47.4
(3)
A 		26.6
(-0.4)
A 		11.2
(-3)
A 		35
(0.9)
A 		22.7
(-1.1)
A 		36
C 8.3
(-3)
A 		38.6
(0.7)
A 		58
(3)
A 		11.8
(-2.6)
A 		47
(1.7)
A 		51.3
(2.2)
M 		50
avr 32.5
(0.1) 		30
(-0.4) 		36.9
(1) 		16.8
(-3) 		47.1
(3) 		28.4
(-0.7) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 10.5
(0)
A 		12.6
(2.3)
A 		7.8
(-3)
A 		13.2
(3)
A 		5
B 4
(-2.7)
A 		3.3
(-3)
A 		17.9
(3)
M 		16.2
(2.3)
A 		15
C 34.7
(3)
A 		13.8
(-1)
A 		9.7
(-1.7)
A 		3.1
(-3)
A 		32
avr 16.4
(3) 		9.9
(-3) 		11.8
(-1.2) 		10.8
(-2.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.7
(0)
A 		1.4
(-3)
A 		5.7
(-1.4)
A 		6.9
(-1)
A 		17.8
(3)
A 		2.7
(-2.5)
A 		16
B 12.6
(1.5)
A 		15.8
(3)
A 		6.5
(-1.4)
A 		3
(-3)
A 		14.2
(2.3)
A 		8.5
(-0.4)
A 		13
C 3.1
(-2.7)
A 		11.8
(0.8)
A 		14.8
(2)
A 		2.4
(-3)
A 		15.2
(2.2)
A 		17.2
(3)
M 		15
avr 8.5
(-0.7) 		9.7
(-0.1) 		9
(-0.5) 		4.1
(-3) 		15.7
(3) 		9.5
(-0.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18080
Sequence Type Exemplar sequence
Representative Public ID K09C4.3 NCBI
Target Description K09C4.3 /REP_DB=WormBase Gene ID /WP=CE04731 /GEN=hsp-2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=heat shock protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000004462 ENSEMBL cdna:SNAP chromosome:CEL140:X:3293278:3294680:1 11/11 None
GENEFINDER00000004466 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3293278:3294636:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
K09C4.3 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3293278-3294637(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16591 heat shock protein 70 homolog - Caenorhabditis elegans 1.0E-171
blast T16591 heat shock protein 70 homolog - Caenorhabditis elegans 1.0E-134
blast XP_802069 PREDICTED: similar to heat shock protein 8 isoform 4 [Strongylocentrotus purpuratus] 1.0E-94
blast XP_802069 PREDICTED: similar to heat shock protein 8 isoform 4 [Strongylocentrotus purpuratus] 7.0E-90
blast CAB02319 Hypothetical protein F26D10.3 [Caenorhabditis elegans] ref|NP_503068.1| Heat Shock Protein family member (hsp-1) [Caenorhabditis elegans] sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A 7.0E-88
blast CAB02319 Hypothetical protein F26D10.3 [Caenorhabditis elegans] ref|NP_503068.1| Heat Shock Protein family member (hsp-1) [Caenorhabditis elegans] sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A 3.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.1E-117
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.2E-30
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.1E-117
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 2.9E-31
Sequence
Target Sequence 
>C. ELEGANS:187922_AT
gaagatctccgcattggttttgctgaagatgaaggagaccgccgaggccttccttggaac
caccgttaaggatgccgttgtcactgtctcagcttacctcaacgactcccagcgtgaagc
aaccaaggatgccggagccatcgctggacttaacgttcttcgtatcatcaacgagccaac
cgctgccgcaatcgcttacgggtttgacaaggaggttcatgacatcgtccttgttggagg
atctacttgtatcccaaaggcccagaaactgttgtctgaccttttctcaggaaaggaatt
gaacaagtccatcaacccagacgaggccgttgcctacggagctgccgttcaagccgctat
cctctccggagacaagtctgaggacgccaaggatcttctactggacacttctccactttt
cacttctccgtcggaacacaagtttcatagtcaacctctaatttcagtagtgttgtgtcg
acaagcccaactaccgcgtcgttgccgcctccatacaaggcctccttgtgccttatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATCTCCGCATTGGTTTTGCTG 668 337 366 Antisense
TCAACGACTCCCAGCGTGAAGCAAC 328 629 464 Antisense
GCTGGACTTAACGTTCTTCGTATCA 422 293 508 Antisense
CCGCAATCGCTTACGGGTTTGACAA 204 261 551 Antisense
TCTACTTGTATCCCAAAGGCCCAGA 106 615 607 Antisense
GGCCCAGAAACTGTTGTCTGACCTT 318 543 624 Antisense
AAGTCTGAGGACGCCAAGGATCTTC 660 157 739 Antisense
AAGGATCTTCTACTGGACACTTCTC 126 161 754 Antisense
CTTTTCACTTCTCCGTCGGAACACA 701 217 781 Antisense
GTGTTGTGTCGACAAGCCCAACTAC 272 485 835 Antisense
ACAAGGCCTCCTTGTGCCTTATTTT 303 113 880 Antisense
Sequence Source Affymetrix Proprietary Database