[Home] | [Total List]

[187921_at] Protein kinase

Description K06H7.1 /REP_DB=WormBase Gene ID /WP=CE26940 /GB=AAF99990.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase
Cluster 6grp_total > 70      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 85.2
(-0.4)
A 		39.5
(-2.1)
A 		12.6
(-3)
A 		182.6
(3)
P 		170
B 16
(-3)
A 		63.4
(-0.4)
A 		18.7
(-2.9)
A 		126.7
(3)
P 		111
C 38.9
(-1.8)
A 		14.6
(-3)
A 		40.7
(-1.7)
A 		136.4
(3)
P 		122
avr 46.7
(-1.9) 		39.2
(-2.3) 		24
(-3) 		148.6
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 86.4
(1.2)
A 		103.3
(3)
A 		47.2
(-3)
A 		89.9
(1.6)
A 		56.2
(-2)
A 		52.7
(-2.4)
A 		56
B 60.9
(-0.9)
A 		74.4
(0.6)
A 		74.4
(0.6)
M 		97.3
(3)
A 		41
(-3)
A 		73.2
(0.4)
A 		56
C 25.7
(-3)
A 		50.4
(-1.6)
A 		92.2
(0.8)
A 		130.3
(3)
A 		47.3
(-1.8)
A 		97.2
(1.1)
A 		105
avr 57.7
(-2) 		76
(-0.1) 		71.3
(-0.6) 		105.8
(3) 		48.2
(-3) 		74.4
(-0.3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 31
(3)
A 		8.6
(-1.9)
A 		3.3
(-3)
A 		26.7
(2.1)
P 		28
B 5.1
(-2.8)
A 		15.7
(0)
A 		4.3
(-3)
A 		27
(3)
P 		23
C 12.9
(-0.2)
A 		4.2
(-3)
A 		14.2
(0.2)
A 		23
(3)
P 		19
avr 16.3
(-0) 		9.5
(-2.3) 		7.3
(-3) 		25.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.9
(-1.7)
A 		36.7
(3)
A 		10.3
(-3)
A 		22.8
(-0.2)
A 		17
(-1.5)
A 		12.8
(-2.4)
A 		26
B 21.2
(-0.5)
A 		24.8
(1.6)
A 		18.1
(-2.2)
M 		25.8
(2.2)
A 		16.7
(-3)
A 		27.3
(3)
A 		11
C 9.5
(-3)
A 		15.4
(-1.5)
A 		23.5
(0.7)
A 		26.2
(1.4)
A 		15.3
(-1.5)
A 		32.5
(3)
A 		23
avr 15.5
(-3) 		25.6
(3) 		17.3
(-1.9) 		24.9
(2.6) 		16.3
(-2.5) 		24.2
(2.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7357
Sequence Type Exemplar sequence
Representative Public ID K06H7.1 NCBI
Target Description K06H7.1 /REP_DB=WormBase Gene ID /WP=CE26940 /GB=AAF99990.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066368 NCBI Caenorhabditis elegans K06H7.1 (K06H7.1) mRNA, complete cds. 11/11 None
SNAP00000036736 ENSEMBL cdna:SNAP chromosome:CEL140:III:8099483:8100559:1 9/11 None
K06H7.1 ENSEMBL cdna:known chromosome:CEL140:III:8099248:8100559:1 gene:K06H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8099480-8100557(+) 100.0 100.0
Public Domain and Genome References
Gene Title Protein kinase
Ensembl K06H7.1
Entrez Gene 187076 Entrez gene
SwissProt P34509 EMBL-EBI
WormBase CE26940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99990 Hypothetical protein K06H7.1 [Caenorhabditis elegans] ref|NP_498769.1| K06H7.1 [Caenorhabditis elegans] sp|P34509|YMX1_CAEEL Hypothetical protein K06H7.1 in chromosome III 0.0
blast AAF99990 Hypothetical protein K06H7.1 [Caenorhabditis elegans] ref|NP_498769.1| K06H7.1 [Caenorhabditis elegans] sp|P34509|YMX1_CAEEL Hypothetical protein K06H7.1 in chromosome III 1.0E-126
blast CAE64505 Hypothetical protein CBG09232 [Caenorhabditis briggsae] 3.0E-69
blast CAE64505 Hypothetical protein CBG09232 [Caenorhabditis briggsae] 6.0E-40
Sequence
Target Sequence 
>C. ELEGANS:187921_AT
ggcttgacgagctttttatagacttgaaagcaagcaaatgtatttgtagttcgaatgagc
ttttgaacattccaaaaatcatcgttagaaggctttttctaaaaatggaatctctggaaa
tgttggagtggtggattgaaagagttgatccgaactctctaaatgagctgtgtattgctc
ctcatggagaatatccacttgatattccgtccaagatatttgatcttccacatttccaaa
attgcaaaacactgagtattatggagcactgttctttctcaaccgaccaatttctagcat
tgtgtattgcaattccaaatttttctttttattcggacagaattgatgaaaatatagttg
ctcatgcgataaagaaacgtctcagcttaaatgatcaatttgttgtcctagaatggtttt
tcactaaacacgtgaatgttgaaaaagtcacaggagatttgaagtgtacgaattatgata
gaaaagagcgctttgatgtcaaaactgagtgcttcgagccagttgatgtatacagtgttc
cagatgagaataacaagaaaacgtccttgctggttttgaaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTGACGAGCTTTTTATAGACTT 469 537 224 Antisense
GTTGATCCGAACTCTCTAAATGAGC 684 437 367 Antisense
TGAGCTGTGTATTGCTCCTCATGGA 639 569 387 Antisense
TATCCACTTGATATTCCGTCCAAGA 469 657 415 Antisense
AGATATTTGATCTTCCACATTTCCA 62 67 437 Antisense
TATGGAGCACTGTTCTTTCTCAACC 583 655 483 Antisense
TCTCAACCGACCAATTTCTAGCATT 86 613 500 Antisense
GTTGTCCTAGAATGGTTTTTCACTA 36 435 625 Antisense
GTCAAAACTGAGTGCTTCGAGCCAG 601 463 721 Antisense
TCGAGCCAGTTGATGTATACAGTGT 223 603 737 Antisense
AACGTCCTTGCTGGTTTTGAAAGAT 251 143 783 Antisense
Sequence Source Affymetrix Proprietary Database