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[187919_s_at]

Description C55B7.10 /REP_DB=WormBase Gene ID /WP=CE09021 /GB=AAK68270.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=casein kinase
Cluster 6grp_total > 99      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.5
(-3)
A 		3.4
(-2.3)
A 		4
(-1.8)
A 		10.2
(3)
A 		8
B 3.1
(-3)
A 		4
(-2.7)
A 		6
(-2)
A 		20.9
(3)
A 		18
C 3.4
(-2.8)
A 		2.3
(-3)
A 		5.2
(-2.4)
A 		33.3
(3)
A 		31
avr 3
(-3) 		3.2
(-2.9) 		5.1
(-2.3) 		21.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 2.9
(-3)
A 		5.4
(-1.8)
A 		5.6
(-1.7)
A 		5.5
(-1.7)
A 		14.9
(3)
A 		9.8
(0.5)
A 		12
B 4
(-2.7)
A 		5.6
(-2.5)
A 		1.6
(-3)
A 		1.3
(-3)
A 		51
(3)
A 		44
(2.2)
A 		50
C 2.4
(-3)
A 		6.9
(-2.2)
A 		6.7
(-2.2)
A 		24.9
(1)
A 		36.1
(3)
A 		35
(2.8)
A 		34
avr 3.1
(-3) 		6
(-2.4) 		4.6
(-2.7) 		10.6
(-1.5) 		34
(3) 		29.6
(2.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.9
(-1.5)
A 		0.7
(-3)
A 		1
(-0.8)
A 		1.5
(3)
A 		1
B 1
(-3)
A 		1
(-3)
A 		1.4
(-2.3)
A 		4.5
(3)
A 		4
C 1.1
(-2.4)
A 		0.6
(-3)
A 		1.8
(-1.6)
A 		5.6
(3)
A 		5
avr 1
(-2.6) 		0.8
(-3) 		1.4
(-1.8) 		3.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.9
(-0.9)
A 		1.2
(-2)
A 		1.4
(-1.7)
A 		4.5
(3)
A 		2.4
(-0.2)
A 		4
B 1.4
(-2.7)
A 		1.9
(-2.6)
A 		0.4
(-3)
A 		0.4
(-3)
A 		20.7
(3)
A 		16.4
(1.7)
A 		20
C 0.9
(-3)
A 		2.1
(-2.3)
A 		1.7
(-2.6)
A 		5
(-0.7)
A 		11.7
(3)
A 		11.7
(3)
A 		11
avr 0.9
(-3) 		2
(-2.4) 		1.1
(-2.9) 		2.3
(-2.3) 		12.3
(3) 		10.2
(1.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187919_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.877
Sequence Type Exemplar sequence
Representative Public ID C55B7.10 NCBI
Target Description C55B7.10 /REP_DB=WormBase Gene ID /WP=CE09021 /GB=AAK68270.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=casein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059375 NCBI Caenorhabditis elegans T09B4.7 (T09B4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000038313 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6510343:6511990:-1 10/11 None
SNAP00000038302 ENSEMBL cdna:SNAP chromosome:CEL140:I:6510479:6511990:-1 11/11 None
GENEFINDER00000036050 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6166251:6170125:-1 11/11 None
SNAP00000036036 ENSEMBL cdna:SNAP chromosome:CEL140:I:6168215:6169800:-1 11/11 None
T09B4.7 ENSEMBL cdna:known chromosome:CEL140:I:6168215:6169800:-1 gene:T09B4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059472 7/11 Cross Hyb Matching Probes None
C55B7.10 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6510756-6511726(-) 100.0 100.0
chrI:6168577-6169536(-) 97.73 97.73
Public Domain and Genome References
Gene Title
Ensembl T09B4.7
Entrez Gene 188318 Entrez gene
SwissProt O02157 EMBL-EBI
WormBase CE13469 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53009 Hypothetical protein T09B4.7 [Caenorhabditis elegans] ref|NP_491776.1| T09B4.7 [Caenorhabditis elegans] 1.0E-172
blast AAB53009 Hypothetical protein T09B4.7 [Caenorhabditis elegans] ref|NP_491776.1| T09B4.7 [Caenorhabditis elegans] 1.0E-160
blast AAB53009 Hypothetical protein T09B4.7 [Caenorhabditis elegans] ref|NP_491776.1| T09B4.7 [Caenorhabditis elegans] 1.0E-152
blast CAE67403 Hypothetical protein CBG12889 [Caenorhabditis briggsae] 1.0E-142
blast CAE67403 Hypothetical protein CBG12889 [Caenorhabditis briggsae] 1.0E-116
blast CAE67403 Hypothetical protein CBG12889 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.3E-5
Pfam IPR000719 EMBL-EBI Protein kinase 2.5E-4
Pfam IPR000719 EMBL-EBI Protein kinase 4.3E-5
Sequence
Target Sequence 
>C. ELEGANS:187919_S_AT
gcttgcgaggagctacatcgtattggatttgtttcccgtgatgtgaagccagggaatttc
gctcctggggtcaagtcgaatcgccaaagtcgtacaatttttatgtatgattttggtctg
gcaagaaaatacattgacaagaataatcaagtgattccaacaagaaaagaagttggatgg
agaggaacaactagatatggtagcctcaatgctcacaaacgattggatttaggacgacgc
gatgatctggaaagctggttttatgggttggtagaaatgacaagaggaactctgccatgg
agaaatgttgttgatcgaagttcggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGCGAGGAGCTACATCGTATTG 284 305 364 Antisense
TGTGAAGCCAGGGAATTTCGCTCCT 382 555 405 Antisense
ATCGCCAAAGTCGTACAATTTTTAT 94 37 443 Antisense
TTTATGTATGATTTTGGTCTGGCAA 457 671 463 Antisense
GGAACAACTAGATATGGTAGCCTCA 152 529 547 Antisense
GGTAGCCTCAATGCTCACAAACGAT 644 503 562 Antisense
ACGATTGGATTTAGGACGACGCGAT 451 91 582 Antisense
ATTTAGGACGACGCGATGATCTGGA 193 15 590 Antisense
GCTGGTTTTATGGGTTGGTAGAAAT 630 291 617 Antisense
GGAACTCTGCCATGGAGAAATGTTG 65 529 649 Antisense
AAATGTTGTTGATCGAAGTTCGGTT 508 113 666 Antisense
Sequence Source Affymetrix Proprietary Database