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[187918_at]

Description C55B7.10 /REP_DB=WormBase Gene ID /WP=CE09021 /GB=AAK68270.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=casein kinase
Cluster 6grp_total > 79      4grp_total > 18      6grp_cgc > 89      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 16.9
(-2.3)
A 		26.9
(-0.4)
A 		13.4
(-3)
A 		45.1
(3)
A 		32
B 13.3
(-0.1)
M 		3.3
(-3)
A 		11.7
(-0.6)
A 		24.1
(3)
A 		21
C 6.5
(-3)
A 		24.2
(3)
A 		14.8
(-0.2)
A 		10.3
(-1.7)
A 		18
avr 12.2
(-3) 		18.1
(-0.5) 		13.3
(-2.5) 		26.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 20.7
(-3)
A 		31
(1.5)
A 		20.8
(-3)
A 		21.6
(-2.6)
A 		29.5
(0.9)
A 		34.4
(3)
A 		14
B 16.1
(-1)
A 		22.9
(0.2)
A 		14.8
(-1.3)
A 		4.9
(-3)
A 		38.9
(3)
P 		32.2
(1.8)
P 		34
C 7.8
(-3)
A 		47.7
(2.9)
P 		21.5
(-1)
A 		21.3
(-1)
A 		48.7
(3)
A 		37.9
(1.4)
P 		41
avr 14.9
(-3) 		33.9
(1.7) 		19
(-2) 		15.9
(-2.8) 		39
(3) 		34.8
(2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.1
(2)
A 		5.8
(1.5)
A 		3.5
(-3)
A 		6.6
(3)
A 		3
B 4.2
(1.7)
M 		0.8
(-3)
A 		2.7
(-0.3)
A 		5.1
(3)
A 		4
C 2.1
(-2.5)
A 		7
(3)
A 		5.2
(1)
A 		1.7
(-3)
A 		5
avr 4.1
(-0.4) 		4.5
(3) 		3.8
(-3) 		4.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.8
(-3)
A 		11
(3)
A 		4.5
(-2.4)
A 		5.5
(-1.6)
A 		8.9
(1.3)
A 		8.4
(0.8)
A 		7
B 5.6
(-1.2)
A 		7.6
(-0.4)
A 		3.6
(-2)
A 		1.3
(-3)
A 		15.8
(3)
P 		12
(1.4)
P 		15
C 2.9
(-3)
A 		14.6
(2.4)
P 		5.5
(-1.8)
A 		4.3
(-2.3)
A 		15.8
(3)
A 		12.7
(1.6)
P 		13
avr 4.1
(-2.8) 		11.1
(1.5) 		4.5
(-2.5) 		3.7
(-3) 		13.5
(3) 		11
(1.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.877
Sequence Type Exemplar sequence
Representative Public ID C55B7.10 NCBI
Target Description C55B7.10 /REP_DB=WormBase Gene ID /WP=CE09021 /GB=AAK68270.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=casein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059472, NM_059375
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038313 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6510343:6511990:-1 11/11 None
SNAP00000038302 ENSEMBL cdna:SNAP chromosome:CEL140:I:6510479:6511990:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6510756-6511726(-) 100.0 100.0
chrI:6168577-6169536(-) 97.73 97.73
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53009 Hypothetical protein T09B4.7 [Caenorhabditis elegans] ref|NP_491776.1| T09B4.7 [Caenorhabditis elegans] 1.0E-152
blast CAE67403 Hypothetical protein CBG12889 [Caenorhabditis briggsae] 1.0E-142
blast CAE67403 Hypothetical protein CBG12889 [Caenorhabditis briggsae] 1.0E-116
blast AAB53009 Hypothetical protein T09B4.7 [Caenorhabditis elegans] ref|NP_491776.1| T09B4.7 [Caenorhabditis elegans] 1.0E-102
blast CAE67069 Hypothetical protein CBG12477 [Caenorhabditis briggsae] 1.0E-86
blast CAE67069 Hypothetical protein CBG12477 [Caenorhabditis briggsae] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.3E-5
Pfam IPR000719 EMBL-EBI Protein kinase 2.5E-4
Sequence
Target Sequence 
>C. ELEGANS:187918_AT
gaaaagactttgattacatgatgatcactctgctaggaaaggatctacacaagttgagat
gcgagctcccgggtcggaagttttcaatcaatacagctcttcgtattggaattcagacac
tgaaagcttgcgaggagctacatcgtattggatttgtttcccgtgatgtgaagccaggga
atttcgctcctggggtcaagtcgaatcgccaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGACTTTGATTACATGATGAT 207 355 239 Antisense
ACATGATGATCACTCTGCTAGGAAA 699 103 254 Antisense
CACTCTGCTAGGAAAGGATCTACAC 67 199 264 Antisense
CAAGTTGAGATGCGAGCTCCCGGGT 243 183 288 Antisense
GGAAGTTTTCAATCAATACAGCTCT 612 529 314 Antisense
GTTTTCAATCAATACAGCTCTTCGT 404 449 318 Antisense
TACAGCTCTTCGTATTGGAATTCAG 644 643 330 Antisense
CTTCGTATTGGAATTCAGACACTGA 559 219 337 Antisense
TCAGACACTGAAAGCTTGCGAGGAG 549 623 351 Antisense
TTCGCTCCTGGGGTCAAGTCGAATC 372 695 421 Antisense
CTGGGGTCAAGTCGAATCGCCAAAG 256 241 428 Antisense
Sequence Source Affymetrix Proprietary Database