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[187917_at]

Description Y46C8AL.J_rc /REP_DB=WormBase Gene ID /WP=CE25297 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60604.1
Cluster 6grp_total > 91      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 34.8
(-0.2)
A 		60
(3)
A 		34.4
(-0.2)
A 		12
(-3)
A 		48
B 10.7
(-3)
A 		27
(0.1)
A 		42.3
(3)
A 		15.1
(-2.2)
A 		32
C 14
(-3)
A 		61
(3)
A 		34.1
(-0.4)
A 		24.8
(-1.6)
A 		47
avr 19.8
(-2.5) 		49.3
(3) 		36.9
(0.7) 		17.3
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 10.8
(-2.9)
A 		37.7
(0.1)
A 		9.5
(-3)
A 		64.3
(3)
A 		48.2
(1.2)
A 		21.5
(-1.7)
A 		55
B 16.8
(-0.7)
A 		33.4
(3)
A 		7.8
(-2.6)
A 		12.1
(-1.7)
A 		19.8
(0)
A 		6.2
(-3)
A 		27
C 30.9
(3)
A 		28.8
(2.5)
A 		10.1
(-2.2)
A 		6.7
(-3)
A 		26.1
(1.8)
A 		9.8
(-2.2)
A 		24
avr 19.5
(-0.4) 		33.3
(3) 		9.1
(-3) 		27.7
(1.6) 		31.4
(2.5) 		12.5
(-2.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.7
(2.8)
A 		13
(3)
A 		9
(0.9)
A 		1.8
(-3)
A 		11
B 3.4
(-2.8)
A 		6.7
(0.2)
A 		9.8
(3)
A 		3.2
(-3)
A 		7
C 4.6
(-2.8)
A 		17.5
(3)
A 		11.9
(0.5)
A 		4.2
(-3)
A 		13
avr 6.9
(-0.5) 		12.4
(3) 		10.2
(1.6) 		3.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2
(-3)
A 		13.4
(1.8)
A 		2.1
(-3)
A 		16.3
(3)
A 		14.5
(2.2)
A 		5.2
(-1.7)
A 		14
B 5.8
(-0.5)
A 		11.1
(3)
A 		1.9
(-3)
A 		3.2
(-2.2)
A 		8
(1)
A 		2.3
(-2.7)
A 		9
C 11.5
(3)
A 		8.8
(1.4)
A 		2.6
(-2.3)
A 		1.4
(-3)
A 		8.4
(1.2)
A 		3.3
(-1.9)
A 		10
avr 6.4
(-0.2) 		11.1
(3) 		2.2
(-3) 		7
(0.2) 		10.3
(2.5) 		3.6
(-2.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28194
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.J NCBI
Target Description Y46C8AL.J_rc /REP_DB=WormBase Gene ID /WP=CE25297 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60604.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y46C8AL.J
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y46C8AL.J Y46C8AL.J_rc /REP_DB=WormBase Gene ID /WP=CE25297 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60604.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3952378-3953929(-) 98.91 100.0
Sequence
Target Sequence 
>C. ELEGANS:187917_AT
aaaaccgtatatcgcaaccatctgcctcgtcaataaggaatcctttatgatcgatcgaat
attgtgaagtgtggtcttcgattccttcgttctcatcatcttcatcagttgtgtagcaat
tataagtgtagtagaaaatagagagtagcgcgaagatagcaataacgacaaacatggcag
cagcatagacaaagaattgaacagccatattgtaaaataagttgaggatcgtgatgagga
caattatcgcgtctccaccagcgacggtcaagagccaaagagcttgtacaagagctttca
tcgatggggcagacttctgatcggagcatattttggacaatgttattgagaatttttttt
tgtaaaatttttcgaaacagccgaaaaaaccaataactcggctgtcggctgacgccgaca
gccgaaacgaggccaatttctcggctgtcggctgacgccgacagccgacagccgcacagc
cttggtactgcctaataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCGTATATCGCAACCATCTGC 582 131 15 Antisense
CAACCATCTGCCTCGTCAATAAGGA 674 185 29 Antisense
CATCATCTTCATCAGTTGTGTAGCA 272 213 108 Antisense
TGAGGACAATTATCGCGTCTCCACC 508 567 249 Antisense
TCCACCAGCGACGGTCAAGAGCCAA 366 585 268 Antisense
GAGCTTTCATCGATGGGGCAGACTT 186 383 306 Antisense
GGCAGACTTCTGATCGGAGCATATT 130 535 322 Antisense
AAAACCAATAACTCGGCTGTCGGCT 684 129 400 Antisense
AACGAGGCCAATTTCTCGGCTGTCG 211 145 440 Antisense
TCTCGGCTGTCGGCTGACGCCGACA 446 609 453 Antisense
CACAGCCTTGGTACTGCCTAATAAT 30 195 489 Antisense
Sequence Source Affymetrix Proprietary Database