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[187916_s_at]

Description M04F3.3 /REP_DB=WormBase Gene ID /WP=CE12416 /GB=AAK71382.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 98      4grp_total > 20      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 58.8
(3)
A 		38.8
(0.4)
A 		13.2
(-3)
A 		26.8
(-1.2)
A 		46
B 6.9
(-2.9)
A 		11.7
(-2.3)
A 		5.9
(-3)
A 		54.5
(3)
A 		49
C 11
(-2.4)
A 		8.7
(-3)
A 		10.5
(-2.6)
A 		32.7
(3)
A 		24
avr 25.6
(0.4) 		19.7
(-0.9) 		9.9
(-3) 		38
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 27
(-3)
A 		29.2
(-2.9)
A 		74.4
(-1.9)
A 		69.5
(-2)
A 		223.4
(1.5)
P 		287.4
(3)
P 		260
B 34.5
(-2.8)
A 		23.1
(-3)
A 		37.5
(-2.7)
A 		91.7
(-1.7)
A 		335.4
(3)
P 		311.8
(2.5)
P 		312
C 11.6
(-2.9)
A 		21.7
(-2.7)
A 		7.2
(-3)
A 		104.7
(-1.1)
A 		233.7
(1.3)
P 		322.8
(3)
P 		316
avr 24.4
(-3) 		24.7
(-3) 		39.7
(-2.7) 		88.6
(-1.6) 		264.2
(2.1) 		307.3
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.4
(3)
A 		8.4
(-1.3)
A 		3.4
(-3)
A 		3.9
(-2.8)
A 		18
B 2.2
(-2.5)
A 		2.9
(-2.1)
A 		1.4
(-3)
A 		11.6
(3)
A 		10
C 3.6
(-0.8)
A 		2.5
(-3)
A 		3.7
(-0.6)
A 		5.5
(3)
A 		3
avr 9.1
(3) 		4.6
(-1.3) 		2.8
(-3) 		7
(1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 5
(-3)
A 		10.4
(-2.5)
A 		16.2
(-2)
A 		17.6
(-1.8)
A 		67.4
(2.8)
P 		70
(3)
P 		65
B 12
(-2.8)
A 		7.7
(-3)
A 		9.1
(-2.9)
A 		24.3
(-2.2)
A 		136.3
(3)
P 		116.3
(2.1)
P 		129
C 4.3
(-2.9)
A 		6.6
(-2.7)
A 		1.8
(-3)
A 		21
(-1.9)
A 		75.6
(1.2)
P 		108
(3)
P 		106
avr 7.1
(-3) 		8.2
(-2.9) 		9
(-2.9) 		21
(-2.1) 		93.1
(2.7) 		98.1
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187916_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1423
Sequence Type Exemplar sequence
Representative Public ID M04F3.3 NCBI
Target Description M04F3.3 /REP_DB=WormBase Gene ID /WP=CE12416 /GB=AAK71382.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059042 NCBI Caenorhabditis elegans Kinesin Cargo Adaptor family member (kca-1) (kca-1) mRNA, complete cds. 11/11 A 
SNAP00000000875 ENSEMBL cdna:SNAP chromosome:CEL140:I:4761932:4762360:-1 9/11 None
GENEFINDER00000000882 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4761932:4762360:-1 9/11 None
C10H11.10 ENSEMBL cdna:known chromosome:CEL140:I:4759881:4761505:-1 gene:C10H11.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4718120-4719573(+) 66.85 66.85
chrI:4761931-4764697(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol kca-1
Ensembl C10H11.10
Entrez Gene 172090 Entrez gene
SwissProt P91042 EMBL-EBI
WormBase CE39088 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491443 Kinesin Cargo Adaptor family member (kca-1) [Caenorhabditis elegans] 0.0
blast AAB42349 Kinesin cargo adaptor protein 1 [Caenorhabditis elegans] 0.0
blast ABA18182 kinesin 1 cargo adaptor alternative variant a [Caenorhabditis elegans] 0.0
blast NP_491443 Kinesin Cargo Adaptor family member (kca-1) [Caenorhabditis elegans] 1.0E-79
blast ABA18182 kinesin 1 cargo adaptor alternative variant a [Caenorhabditis elegans] 1.0E-79
blast AAB42349 Kinesin cargo adaptor protein 1 [Caenorhabditis elegans] 1.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491443.1 1 17-39
C10H11.10 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:187916_S_AT
ttgcagccgttcgattccaaatggttcgacaagacgccggagtgatgatcggagaagatg
ctctgtcctactgctcagggcagagcacttccgattcatcatttcgaacaatgaaatcga
cttcattatcgagctcctggcattctatggcatctccacacacttctgacgtacaaggcg
tctcgttcttccggccattcagctggtttgtatggcgtcagactgagaaggacttgaaga
agaaacaggacaaagaaactgtcgatgaaataatgaagtgcttccggaacaacgacgtcg
acggaatggagaagtttgttgaaaaaaagactcgcgagtctgtgtcgtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAGCCGTTCGATTCCAAATGGT 552 701 1232 Antisense
AATGGTTCGACAAGACGCCGGAGTG 79 161 1251 Antisense
GATCGGAGAAGATGCTCTGTCCTAC 608 417 1278 Antisense
TCTGTCCTACTGCTCAGGGCAGAGC 602 607 1293 Antisense
GAGCACTTCCGATTCATCATTTCGA 68 391 1314 Antisense
ATTATCGAGCTCCTGGCATTCTATG 682 11 1356 Antisense
CTCCACACACTTCTGACGTACAAGG 93 235 1385 Antisense
GACGTACAAGGCGTCTCGTTCTTCC 588 377 1399 Antisense
TTCCGGCCATTCAGCTGGTTTGTAT 535 697 1420 Antisense
GCTTCCGGAACAACGACGTCGACGG 349 305 1511 Antisense
AGACTCGCGAGTCTGTGTCGTCAAT 206 71 1559 Antisense
Sequence Source Affymetrix Proprietary Database