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[187915_at]

Description Y45G5AM.E_rc /REP_DB=WormBase Gene ID /WP=CE26402 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23362.1
Cluster 6grp_total > 92      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.5
(-3)
A 		3.9
(-1.5)
A 		8.2
(3)
A 		5.8
(0.5)
A 		6
B 5.5
(3)
A 		3.3
(-2.3)
A 		5.2
(2.3)
A 		3
(-3)
A 		3
C 4.3
(3)
A 		2.5
(-2.1)
A 		2.2
(-3)
A 		3.3
(0.1)
A 		2
avr 4.1
(-0.3) 		3.2
(-3) 		5.2
(3) 		4
(-0.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.1
(-1.3)
A 		2.3
(-2.9)
A 		2.2
(-3)
A 		2.2
(-3)
A 		8.8
(3)
A 		4.7
(-0.7)
A 		7
B 3
(-2.2)
A 		7.3
(3)
A 		2.3
(-3)
A 		5.9
(1.3)
A 		4.6
(-0.2)
A 		2.3
(-3)
A 		5
C 2.5
(-2.4)
A 		6.9
(3)
A 		3.4
(-1.3)
A 		4.7
(0.3)
A 		2.1
(-2.9)
A 		2
(-3)
A 		5
avr 3.2
(-1.8) 		5.5
(3) 		2.6
(-3) 		4.3
(0.5) 		5.2
(2.4) 		3
(-2.2) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.9
(-3)
A 		0.9
(-3)
A 		2.1
(3)
A 		0.9
(-3)
A 		1
B 1.8
(3)
A 		0.8
(-2)
A 		1.2
(-0)
A 		0.6
(-3)
A 		1
C 1.4
(3)
A 		0.7
(-2.3)
A 		0.8
(-1.5)
A 		0.6
(-3)
A 		1
avr 1.4
(3) 		0.8
(-2.1) 		1.4
(3) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.8
(-2.2)
A 		0.8
(-2.2)
A 		0.5
(-3)
A 		0.6
(-2.7)
A 		2.7
(3)
A 		1.1
(-1.4)
A 		2
B 1
(-1.7)
A 		2.4
(3)
A 		0.6
(-3)
A 		1.6
(0.3)
A 		1.9
(1.3)
A 		0.9
(-2)
A 		2
C 0.9
(-2.1)
A 		2.1
(3)
A 		0.9
(-2.1)
A 		0.9
(-2.1)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1
avr 0.9
(-1.9) 		1.8
(3) 		0.7
(-3) 		1
(-1.4) 		1.8
(3) 		0.9
(-1.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28202
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.E NCBI
Target Description Y45G5AM.E_rc /REP_DB=WormBase Gene ID /WP=CE26402 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23362.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y45G5AM.E
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y45G5AM.E Y45G5AM.E_rc /REP_DB=WormBase Gene ID /WP=CE26402 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23362.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171924 10/11 Negative Strand Matching Probes A B 
NM_171445 10/11 Negative Strand Matching Probes A B 
SNAP00000024437 10/11 Negative Strand Matching Probes None
GENEFINDER00000024462 9/11 Negative Strand Matching Probes None
Y45G5AL.1a.2 10/11 Negative Strand Matching Probes None
Y45G5AL.1a.1 10/11 Negative Strand Matching Probes None
Y45G5AL.1b 10/11 Negative Strand Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4145335-4147309(-) 83.12 100.0
Sequence
Target Sequence 
>C. ELEGANS:187915_AT
cagatcgcgtggttccacttcaactccaacgacaccttggtgaacttcgtcgaggacttg
agttaccttcgccttcatggaactggtgattccctgagatcttccagcagacttcagatc
tggatgctcgacaaggaattgtggattcttggcgcccatagttcttgcaagcttcaactg
attgaaatccggagccgagaatggcatccgctcgattggcgacggctctattgttgcaga
tatctcgtcatatctgatgggaacttggatcggcgtctgtgtcggctcaaactcgaaatc
ataaattgtagtgtaatgaataaccgacggtggagcacacgccatcttttgaactttcgc
ccgatatgccttctcgcggtattgtgtatccggcatgataacaccatcaacgtcggtttg
tccaacagcgatgatgctttttccgtgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGATCGCGTGGTTCCACTTCAACT 484 205 139 Antisense
GACACCTTGGTGAACTTCGTCGAGG 89 367 169 Antisense
GTCGAGGACTTGAGTTACCTTCGCC 487 473 187 Antisense
TGGTGATTCCCTGAGATCTTCCAGC 106 553 222 Antisense
CTTGGCGCCCATAGTTCTTGCAAGC 582 217 286 Antisense
GGAGCCGAGAATGGCATCCGCTCGA 577 521 329 Antisense
CGATTGGCGACGGCTCTATTGTTGC 161 249 351 Antisense
TTTTGAACTTTCGCCCGATATGCCT 143 675 485 Antisense
ATGCCTTCTCGCGGTATTGTGTATC 532 41 504 Antisense
AACACCATCAACGTCGGTTTGTCCA 107 137 538 Antisense
CAGCGATGATGCTTTTTCCGTGTCG 387 203 564 Antisense
Sequence Source Affymetrix Proprietary Database