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[187914_s_at]

Description AC7.2 /REP_DB=WormBase Gene ID /WP=CE25736 /GEN=soc-2 /TR=Q22875 /GB=AAB03417.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 30      6grp_total > 15      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 923
1 2 3 4 range
A 1374
(3)
P 		1135.2
(1.4)
P 		1168.1
(1.7)
P 		454.1
(-3)
P 		920
B 1339.2
(3)
P 		1110.7
(1.4)
P 		1254.8
(2.4)
P 		479.6
(-3)
P 		860
C 1313.2
(3)
P 		1245.6
(2.5)
P 		1243
(2.5)
P 		450.8
(-3)
P 		862
avr 1342.1
(3) 		1163.8
(1.8) 		1222
(2.2) 		461.5
(-3) 		881

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1017
1 2 3 4 5 6 range
A 1464.3
(3)
P 		1026.2
(0.4)
P 		769.1
(-1.1)
P 		692.7
(-1.6)
P 		667.8
(-1.7)
P 		456.8
(-3)
P 		1008
B 1244.7
(3)
P 		1143.8
(2.2)
P 		705
(-1.3)
P 		831.8
(-0.3)
P 		648.1
(-1.8)
P 		498.6
(-3)
P 		746
C 1440.8
(3)
P 		1112.2
(1)
P 		828
(-0.7)
P 		538.2
(-2.5)
P 		649.4
(-1.8)
P 		447.6
(-3)
P 		993
avr 1383.3
(3) 		1094.1
(1.1) 		767.4
(-1) 		687.6
(-1.6) 		655.1
(-1.8) 		467.7
(-3) 		916
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 434
1 2 3 4 range
A 500.3
(3)
P 		246.4
(-0.5)
P 		305.4
(0.3)
P 		66.5
(-3)
P 		434
B 427.1
(3)
P 		274.3
(0.2)
P 		290.8
(0.5)
P 		102.2
(-3)
P 		325
C 434.7
(3)
P 		358.1
(1.7)
P 		433.2
(3)
P 		76
(-3)
P 		359
avr 454
(3) 		292.9
(0.4) 		343.1
(1.2) 		81.6
(-3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 269.9
(0.8)
P 		365
(3)
P 		167.5
(-1.7)
P 		175.7
(-1.5)
P 		201.5
(-0.9)
P 		111.2
(-3)
P 		254
B 433.1
(3)
P 		380.7
(1.8)
P 		171.2
(-3)
P 		220.3
(-1.9)
P 		263.3
(-0.9)
P 		185.9
(-2.7)
P 		262
C 534
(3)
P 		339.4
(0.3)
P 		210.7
(-1.6)
P 		108.2
(-3)
P 		210.1
(-1.6)
P 		149.9
(-2.4)
P 		426
avr 412.3
(3) 		361.7
(1.8) 		183.1
(-2.2) 		168.1
(-2.6) 		225
(-1.3) 		149
(-3) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187914_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10474
Sequence Type Exemplar sequence
Representative Public ID AC7.2 NCBI
Target Description AC7.2 /REP_DB=WormBase Gene ID /WP=CE25736 /GEN=soc-2 /TR=Q22875 /GB=AAB03417.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171332(11), NM_001026088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171332 NCBI Caenorhabditis elegans Suppressor Of Clr family member (soc-2) (soc-2) mRNA, complete cds. 11/11 A 
NM_001026088 NCBI Caenorhabditis elegans Suppressor Of Clr family member (soc-2) (soc-2) mRNA, complete cds. 11/11 None
SNAP00000001729 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5127392:5133760:-1 11/11 None
AC7.2b.1 ENSEMBL cdna:known chromosome:CEL140:IV:5126996:5145800:-1 gene:AC7.2 11/11 A 
AC7.2a.1 ENSEMBL cdna:known chromosome:CEL140:IV:5127035:5133847:-1 gene:AC7.2 11/11 None
AC7.2b.2 ENSEMBL cdna:known chromosome:CEL140:IV:5127068:5145800:-1 gene:AC7.2 11/11 A 
AC7.2a.2 ENSEMBL cdna:known chromosome:CEL140:IV:5127392:5134001:-1 gene:AC7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5127397-5133766(-) 100.0 100.0
Public Domain and Genome References
Ensembl AC7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM81129 Suppressor of clr protein 2, isoform b [Caenorhabditis elegans] ref|NP_741391.2| Suppressor Of Clr family member (soc-2) [Caenorhabditis elegans] 0.0
blast AAB03417 Suppressor of clr protein 2, isoform a [Caenorhabditis elegans] ref|NP_001021259.1| Suppressor Of Clr family member (soc-2) [Caenorhabditis elegans] gb|AAC39129.1| Ras-binding protein SUR-8 [Caenorhabditis elegans] gb|AAC25697.1| leucine-rich repeat protein SOC-2 [Caenorhabditis elegans] 0.0
blast CAE72750 Hypothetical protein CBG19995 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.027
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0048
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0054
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0012
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.065
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.29
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.27
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.081
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0046
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 6.6E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.093
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0064
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.15
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.027
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0048
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0054
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0012
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.065
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.29
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.27
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.081
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0046
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 6.6E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.093
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0064
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.15
Sequence
Target Sequence 
>C. ELEGANS:187914_S_AT
aaaatgagctggtctcgttgcctttggacatgggatcttggacatcaatcaccgagctca
atctctccacaaatcaattgaaagttttgccagaagatatcgaaaaacttgtgaatctgg
aaatccttgtgctgtccaacaatcaactgaaaaagcttccaaatcaaataggaaatctca
ataaactccgcgagctggatctcgaggaaaatgaattggagaccgttccaactgaaatcg
gatttttacaacatcttacgaaactgtgggttcagtcaaacaagattttgactctaccaa
gatccattggaaatttgtgttcgcttcaagatttgcgattgggagagaacaatttgacag
cgattcccgaggaaattggccacctcgactcattgaaatctctatacctcaacgacaact
cctctcttcacaatttgccatttgagttggcactgtgccaatcgcttgaaataatgtcaa
tcgaaaactctccactttctcagattccacctgaaatcactgctggtggtccttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGAGCTGGTCTCGTTGCCTTT 468 127 1094 Antisense
GGATCTTGGACATCAATCACCGAGC 335 511 1126 Antisense
GAGCTCAATCTCTCCACAAATCAAT 55 389 1147 Antisense
GGAAATCCTTGTGCTGTCCAACAAT 129 527 1212 Antisense
AACTCCGCGAGCTGGATCTCGAGGA 399 141 1277 Antisense
GCCACCTCGACTCATTGAAATCTCT 63 281 1472 Antisense
ATCTCTATACCTCAACGACAACTCC 689 31 1491 Antisense
TCCTCTCTTCACAATTTGCCATTTG 438 593 1513 Antisense
TGGCACTGTGCCAATCGCTTGAAAT 493 545 1541 Antisense
ATCGAAAACTCTCCACTTTCTCAGA 261 37 1573 Antisense
TGAAATCACTGCTGGTGGTCCTTCA 74 573 1605 Antisense
Sequence Source Affymetrix Proprietary Database