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[187913_at] drop9

Description R166.1 /REP_DB=WormBase Gene ID /WP=CE03580 /TR=Q22002 /GB=CAA90662.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=drop9
Cluster 6grp_total > 91      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 7.7
(-3)
A 		24.3
(3)
A 		13.8
(-0.8)
A 		17.1
(0.4)
A 		17
B 37.4
(2.3)
A 		28
(0.5)
A 		9.2
(-3)
A 		41.4
(3)
A 		32
C 11.7
(-2.9)
A 		11.5
(-2.9)
A 		11
(-3)
A 		50.8
(3)
A 		40
avr 18.9
(-1.2) 		21.3
(-0.6) 		11.3
(-3) 		36.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 46.8
(0.3)
A 		3.8
(-3)
A 		16.3
(-2)
A 		34.1
(-0.7)
A 		83.3
(3)
A 		3.4
(-3)
A 		80
B 24.4
(1.2)
A 		4.5
(-3)
A 		15.5
(-0.7)
A 		12.5
(-1.3)
A 		32.7
(3)
A 		30.3
(2.5)
A 		28
C 9.2
(-3)
A 		17.2
(-2.5)
A 		34.2
(-1.5)
A 		108.1
(3)
A 		25.2
(-2)
A 		15.3
(-2.6)
A 		99
avr 26.8
(-0.5) 		8.5
(-3) 		22
(-1.1) 		51.6
(3) 		47.1
(2.4) 		16.3
(-1.9) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.8
(-2.4)
A 		5.3
(3)
A 		3.6
(-0.6)
A 		2.5
(-3)
A 		3
B 11.9
(3)
A 		6.9
(-0.1)
A 		2.1
(-3)
A 		8.8
(1.1)
A 		10
C 3.9
(-2.3)
A 		3.3
(-3)
A 		3.8
(-2.4)
A 		8.6
(3)
A 		5
avr 6.2
(2.3) 		5.2
(0.5) 		3.2
(-3) 		6.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.6
(-1.1)
A 		1.3
(-2.9)
A 		3.5
(-2.3)
A 		8.7
(-1)
A 		25.1
(3)
A 		0.8
(-3)
A 		24
B 8.5
(0.6)
A 		1.5
(-3)
A 		3.8
(-1.8)
A 		3.3
(-2.1)
A 		13.3
(3)
A 		11.3
(2)
A 		12
C 3.4
(-3)
A 		5.2
(-2.4)
A 		8.7
(-1.3)
A 		21.7
(3)
A 		8.1
(-1.5)
A 		5.1
(-2.4)
A 		18
avr 6.8
(-1.1) 		2.7
(-3) 		5.3
(-1.8) 		11.2
(1) 		15.5
(3) 		5.7
(-1.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187913_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3885
Sequence Type Exemplar sequence
Representative Public ID R166.1 NCBI
Target Description R166.1 /REP_DB=WormBase Gene ID /WP=CE03580 /TR=Q22002 /GB=CAA90662.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=drop9
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063867 NCBI Caenorhabditis elegans R166.1 (drop9) mRNA, complete cds. 11/11 None
SNAP00000017511 ENSEMBL cdna:SNAP chromosome:CEL140:II:10530332:10533416:1 11/11 None
GENEFINDER00000017523 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10527780:10533416:1 11/11 None
R166.1 ENSEMBL cdna:known chromosome:CEL140:II:10530679:10533416:1 gene:R166.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10530675-10533413(+) 100.0 100.0
Public Domain and Genome References
Gene Title drop9
Ensembl R166.1
Entrez Gene 187916 Entrez gene
SwissProt Q22002 EMBL-EBI
WormBase CE03580 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16481 negative regulation of transcription inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16564 transcriptional repressor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90662 Hypothetical protein R166.1 [Caenorhabditis elegans] ref|NP_496268.1| R166.1 [Caenorhabditis elegans] 0.0
blast CAE59660 Hypothetical protein CBG03078 [Caenorhabditis briggsae] 1.0E-176
blast XP_624909 PREDICTED: similar to ENSANGP00000028515, partial [Apis mellifera] 2.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR006988 EMBL-EBI Nab, N-terminal 1.4E-31
Pfam IPR006989 EMBL-EBI Nab, central region 4.3E-125
Pfam IPR006988 EMBL-EBI Nab, N-terminal 1.4E-31
Pfam IPR006989 EMBL-EBI Nab, central region 4.3E-125
Pfam IPR006988 EMBL-EBI Nab, N-terminal 1.4E-31
Pfam IPR006989 EMBL-EBI Nab, central region 4.3E-125
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017523 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:187913_AT
gaaaatccgactctatcaactgctcaaatatcccgtctcgctgagtgtgctctggcggct
tccaagaatctcccgccacttccgccgaggttggtgcagaataagaaacgagtttcaaaa
gaagtcatagaactcctcaaatgctctccagcaactccatcaatgatccacgcgtttcgc
aagtattctgcaatttacggacgttttgacactaaacggaagccccataaagttttgaca
cttcatgagacaactgtaaatgaagcagctgctcagctatgtcttctcgttccgtctctt
ttgacacgacgggatgagctgtttccgttggctcgacaaattgtcaaagatgctggatat
aactatgcaaaaagtagaaaacgaccatgtgatccagctgatttgcatagtccgataagc
tcgccgggcaactctccgccccctcaagaatcggaattcgatgaacaaccgtccagttct
tcaggtgcttttaaggaggaagaaaggccaccaattccaccggaagcatgggcggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCCGACTCTATCAACTGCTC 23 355 946 Antisense
TGGCGGCTTCCAAGAATCTCCCGCC 390 545 998 Antisense
CATAGAACTCCTCAAATGCTCTCCA 594 211 1071 Antisense
CATCAATGATCCACGCGTTTCGCAA 255 213 1103 Antisense
AGCAGCTGCTCAGCTATGTCTTCTC 147 77 1209 Antisense
TCGTTCCGTCTCTTTTGACACGACG 475 603 1232 Antisense
CGGGATGAGCTGTTTCCGTTGGCTC 304 243 1255 Antisense
GAAAACGACCATGTGATCCAGCTGA 184 355 1322 Antisense
GATCCAGCTGATTTGCATAGTCCGA 690 415 1336 Antisense
TGAACAACCGTCCAGTTCTTCAGGT 624 573 1407 Antisense
ATTCCACCGGAAGCATGGGCGGCGA 407 7 1459 Antisense
Sequence Source Affymetrix Proprietary Database