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[187912_at]

Description R02F2.3 /REP_DB=WormBase Gene ID /WP=CE00686 /TR=Q21651 /GB=AAA50717.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=BCR
Cluster 4grp_high_8_8 > 35      6grp_total > 02      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 104.3
(3)
P 		37.9
(-3)
P 		100.2
(2.6)
P 		69.4
(-0.2)
P 		66
B 109.7
(1.8)
P 		127.5
(3)
P 		81.1
(-0.1)
P 		38.3
(-3)
A 		89
C 84.6
(-0.8)
P 		155
(3)
P 		43.3
(-3)
P 		90.6
(-0.5)
P 		112
avr 99.5
(1.9) 		106.8
(3) 		74.9
(-1.7) 		66.1
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 23.4
(-3)
A 		67.9
(3)
A 		37.2
(-1.1)
P 		41
(-0.6)
P 		48.1
(0.3)
A 		41.3
(-0.6)
A 		45
B 54.8
(1.7)
P 		56.8
(2)
P 		28.3
(-2.3)
A 		23.7
(-3)
A 		63.4
(3)
P 		43.3
(-0)
A 		40
C 52.5
(0.3)
A 		60.5
(1)
P 		31.3
(-1.5)
A 		84
(3)
A 		66.3
(1.5)
A 		13.9
(-3)
A 		70
avr 43.6
(-0.7) 		61.7
(3) 		32.3
(-3) 		49.6
(0.5) 		59.3
(2.5) 		32.8
(-2.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 38
(3)
P 		8.2
(-3)
P 		26.2
(0.6)
P 		10.2
(-2.6)
P 		30
B 35
(3)
P 		31.5
(2.2)
P 		18.8
(-0.6)
P 		8.2
(-3)
A 		27
C 28
(-0.4)
P 		44.6
(3)
P 		15.1
(-3)
P 		15.3
(-3)
P 		30
avr 33.7
(3) 		28.1
(1.5) 		20
(-0.7) 		11.2
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.3
(-3)
A 		24.1
(3)
A 		8.1
(-1.8)
P 		10.4
(-1.2)
P 		14.5
(0.1)
A 		10.1
(-1.2)
A 		20
B 19.1
(0.9)
P 		18.9
(0.9)
P 		6.9
(-2.8)
A 		6.3
(-3)
A 		25.8
(3)
P 		16.1
(0)
A 		20
C 19.4
(2.3)
A 		18.5
(1.9)
P 		8
(-1.8)
A 		16.9
(1.4)
A 		21.5
(3)
A 		4.6
(-3)
A 		17
avr 14.3
(0.1) 		20.5
(3) 		7.7
(-3) 		11.2
(-1.4) 		20.6
(3) 		10.3
(-1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6377
Sequence Type Exemplar sequence
Representative Public ID R02F2.3 NCBI
Target Description R02F2.3 /REP_DB=WormBase Gene ID /WP=CE00686 /TR=Q21651 /GB=AAA50717.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=BCR
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065771(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065771 NCBI Caenorhabditis elegans R02F2.2 (R02F2.2) mRNA, complete cds. 9/11 A 
GENEFINDER00000033082 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5487478:5492879:1 9/11 None
SNAP00000033070 ENSEMBL cdna:SNAP chromosome:CEL140:III:5488879:5493085:1 9/11 None
R02F2.2 ENSEMBL cdna:known chromosome:CEL140:III:5487478:5498899:1 gene:R02F2.2 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5487476-5491470(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F2.2
Entrez Gene 175756 Entrez gene
SwissProt Q21653 EMBL-EBI
WormBase CE31046 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5085 guanyl-nucleotide exchange factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL06044 Hypothetical protein R02F2.2 [Caenorhabditis elegans] ref|NP_498172.2| R02F2.2 [Caenorhabditis elegans] sp|Q21653|YNG2_CAEEL Hypothetical protein R02F2.2 in chromosome III precursor 0.0
blast T16657 hypothetical protein R02F2.3 - Caenorhabditis elegans 0.0
blast CAE61372 Hypothetical protein CBG05214 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000219 EMBL-EBI DH domain 1.5E-34
Pfam IPR000219 EMBL-EBI DH domain 1.5E-34
Sequence
Target Sequence 
>C. ELEGANS:187912_AT
ttgctcactacgctgagccaacggatagatcagtggcataaagatgcaatactgggagat
gtgcttctagcccatttctccaagcaatcaatgatagaaacctatatctcatttgtggat
aatttcaagtttgccaaggcatcaataatccaagccagacagaagcacgcatttgaaaaa
tattataatagatgctgccgagaccatcctaacaagttggacctagattctcttcttatt
tcaccgattcaacgcgttcctagatacgaattaatagtaaaacaaatgctgaaacacact
cccgttgaacacgaggatcgagagcgactgctcagggctcagaggcatattcattgtctt
gctgtggcaatcaatcagcataaggatggaagtgagcaaatggaacagagactaagggaa
attgaggccatagttgatgggttggatgatgtaagtttgttttttcaaaagggttctcat
acaaaacgcttcgagactacaaaaacatcaaaccgaaatatattcagttgttttatccaa
aaacttccaaaactcaataattgcttatcttcaaactgtcgtatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCACTACGCTGAGCCAACGGA 197 701 1246 Antisense
TGGGAGATGTGCTTCTAGCCCATTT 612 553 1298 Antisense
TAGATGCTGCCGAGACCATCCTAAC 296 653 1434 Antisense
GTTGGACCTAGATTCTCTTCTTATT 113 437 1461 Antisense
TATTTCACCGATTCAACGCGTTCCT 135 663 1482 Antisense
AACAAATGCTGAAACACACTCCCGT 365 135 1526 Antisense
ACACTCCCGTTGAACACGAGGATCG 170 109 1541 Antisense
CGACTGCTCAGGGCTCAGAGGCATA 579 251 1570 Antisense
GGCATATTCATTGTCTTGCTGTGGC 642 535 1589 Antisense
AGGGTTCTCATACAAAACGCTTCGA 552 55 1715 Antisense
GCTTATCTTCAAACTGTCGTATCTT 373 305 1808 Antisense
Sequence Source Affymetrix Proprietary Database