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[187911_at]

Description F08H9.1 /REP_DB=WormBase Gene ID /WP=CE09265 /GEN=coh-3 /TR=Q19232 /GB=CAB01150.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 23      6grp_total > 96      4grp_total > 0      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 68.1
(-2.6)
P 		65.6
(-3)
A 		95.5
(2.1)
P 		100.9
(3)
P 		35
B 72.3
(-3)
P 		73.2
(-2.7)
P 		80.2
(-0.4)
P 		90.5
(3)
P 		18
C 57.3
(-3)
A 		57.1
(-3)
P 		72.4
(-1.4)
M 		112.9
(3)
A 		56
avr 65.9
(-2.9) 		65.3
(-3) 		82.7
(-0.1) 		101.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 67
(-2.9)
A 		72.5
(-2.6)
P 		64.9
(-3)
M 		94.1
(-1.5)
P 		158.5
(1.9)
P 		178.8
(3)
P 		114
B 53.1
(-2.7)
A 		65.6
(-2.2)
P 		46.5
(-3)
A 		126.4
(0.1)
P 		123.3
(0)
P 		199
(3)
P 		153
C 48.4
(-3)
A 		68.4
(-2.3)
A 		69.2
(-2.3)
P 		157.3
(0.9)
P 		106.2
(-0.9)
P 		216
(3)
P 		168
avr 56.2
(-3) 		68.8
(-2.5) 		60.2
(-2.8) 		125.9
(-0) 		129.3
(0.1) 		197.9
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 24.8
(2.9)
P 		14.2
(-3)
A 		25
(3)
P 		14.8
(-2.7)
P 		11
B 23
(3)
P 		18.1
(-3)
P 		18.6
(-2.4)
P 		19.3
(-1.5)
P 		5
C 19
(-1.2)
A 		16.4
(-3)
P 		25.2
(3)
M 		19
(-1.2)
A 		9
avr 22.3
(2.5) 		16.2
(-3) 		22.9
(3) 		17.7
(-1.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 12.4
(-3)
A 		25.8
(-0.7)
P 		14.1
(-2.7)
M 		23.9
(-1.1)
P 		47.8
(3)
P 		43.5
(2.3)
P 		35
B 18.5
(-2.3)
A 		21.8
(-2)
P 		11.3
(-3)
A 		33.5
(-0.9)
P 		50.1
(0.7)
P 		74.2
(3)
P 		63
C 18
(-3)
A 		20.9
(-2.6)
A 		17.6
(-3)
P 		31.6
(-1.5)
P 		34.4
(-1.2)
P 		72.3
(3)
P 		55
avr 16.3
(-2.8) 		22.8
(-2) 		14.3
(-3) 		29.7
(-1.1) 		44.1
(0.6) 		63.3
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13131
Sequence Type Exemplar sequence
Representative Public ID F08H9.1 NCBI
Target Description F08H9.1 /REP_DB=WormBase Gene ID /WP=CE09265 /GEN=coh-3 /TR=Q19232 /GB=CAB01150.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074182(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074182 NCBI Caenorhabditis elegans COHesin family member (coh-3) (coh-3) mRNA, complete cds. 10/11 None
SNAP00000029726 ENSEMBL cdna:SNAP chromosome:CEL140:V:14460064:14462486:1 11/11 None
GENEFINDER00000029742 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14460064:14462486:1 11/11 None
F08H9.1 ENSEMBL cdna:known chromosome:CEL140:V:14460064:14462486:1 gene:F08H9.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14460079-14462486(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol coh-3
Ensembl F08H9.1
Entrez Gene 179949 Entrez gene
SwissProt Q19232 EMBL-EBI
WormBase CE35852 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
228 nuclear chromosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01150 Hypothetical protein F08H9.1 [Caenorhabditis elegans] ref|NP_506583.2| COHesin family member (coh-3) [Caenorhabditis elegans] 0.0
blast NP_504161 Y45G5AM.8 [Caenorhabditis elegans] gb|AAK84607.1| Hypothetical protein Y45G5AM.8 [Caenorhabditis elegans] 0.0
blast CAE66551 Hypothetical protein CBG11863 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR006909 EMBL-EBI Rad21/Rec8 like protein, C-terminal 1.8E-19
Pfam IPR006909 EMBL-EBI Rad21/Rec8 like protein, C-terminal 1.8E-19
Sequence
Target Sequence 
>C. ELEGANS:187911_AT
tgaacttgagcccttggagaccatcgacttgtcacagatgaagttcatgacgactccact
gaaggataaaagtcctatattgactccagtgcatcgaccggaagaaattgagtttcgtga
agagctcgaacttccacggtttgaacaatttgagccgatgaatgtgaatccgatttctcc
aaagtttcaaatggaagagccggcgctatttgaagacaactggaactccaaaccgacgtg
gtcaaatacaagttctgaaaacattgcggatgcgctcaccatccgtgggaatattattcg
ccagctggatgataaaagccccttcgaggtcactctggattcgatgatcccggttgctgc
gacatctcgacgagaagctgctcggacattctatacagttcttgagctcctcaaagaacg
caagattaaggccactcaacgtgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTTGAGCCCTTGGAGACCATC 256 571 1290 Antisense
TATATTGACTCCAGTGCATCGACCG 216 661 1365 Antisense
GCTCGAACTTCCACGGTTTGAACAA 412 295 1413 Antisense
ATCCGATTTCTCCAAAGTTTCAAAT 312 39 1457 Antisense
GAGCCGGCGCTATTTGAAGACAACT 639 385 1486 Antisense
GGAATATTATTCGCCAGCTGGATGA 318 533 1577 Antisense
TGATAAAAGCCCCTTCGAGGTCACT 210 565 1599 Antisense
TGGATTCGATGATCCCGGTTGCTGC 596 549 1625 Antisense
GACGAGAAGCTGCTCGGACATTCTA 569 379 1658 Antisense
GCTCGGACATTCTATACAGTTCTTG 659 299 1669 Antisense
AGATTAAGGCCACTCAACGTGCTCC 262 63 1712 Antisense
Sequence Source Affymetrix Proprietary Database