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[187909_at]

Description M116.3 /REP_DB=WormBase Gene ID /WP=CE21083 /GEN=mut-2 /TR=O44522 /GB=AAB94140.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 20.9
(-2.2)
A 		7.1
(-3)
A 		21.4
(-2.2)
A 		110.9
(3)
A 		104
B 49
(3)
A 		12.3
(-2)
A 		4.8
(-3)
A 		38.2
(1.5)
A 		44
C 31.8
(-1.4)
A 		23.3
(-1.9)
A 		3
(-3)
A 		110.3
(3)
M 		107
avr 33.9
(-1.1) 		14.2
(-2.6) 		9.7
(-3) 		86.5
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 16.8
(-1.3)
A 		3.6
(-3)
A 		50.2
(3)
A 		34.4
(1)
A 		21.9
(-0.6)
A 		9.8
(-2.2)
A 		47
B 31.5
(2)
A 		37
(3)
A 		5.3
(-2.8)
A 		37.2
(3)
A 		22.9
(0.4)
A 		4.4
(-3)
A 		33
C 13.7
(-1.9)
A 		48.5
(1.4)
A 		4.3
(-2.8)
A 		65.2
(3)
A 		2.7
(-3)
A 		4.5
(-2.8)
A 		63
avr 20.7
(-0.8) 		29.7
(0.6) 		19.9
(-0.9) 		45.6
(3) 		15.8
(-1.5) 		6.2
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.6
(-0.5)
A 		1.5
(-3)
A 		5.6
(-1.3)
A 		16.2
(3)
A 		15
B 15.6
(3)
A 		3
(-2.2)
A 		1.1
(-3)
A 		8.1
(-0.1)
A 		15
C 10.5
(0.2)
A 		6.7
(-1.1)
A 		1
(-3)
A 		18.6
(3)
M 		18
avr 11.2
(1.4) 		3.7
(-2.4) 		2.6
(-3) 		14.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.1
(-1.9)
A 		1.3
(-3)
A 		10.9
(3)
A 		8.7
(1.6)
A 		6.6
(0.3)
A 		2.4
(-2.3)
A 		10
B 10.9
(2.2)
A 		12.3
(3)
A 		1.3
(-3)
A 		9.9
(1.7)
A 		9.3
(1.4)
A 		1.6
(-2.8)
A 		11
C 5.1
(-1.2)
A 		14.8
(3)
A 		1.1
(-2.9)
A 		13.1
(2.3)
A 		0.9
(-3)
A 		1.5
(-2.7)
A 		14
avr 6.4
(0.1) 		9.5
(2.3) 		4.4
(-1.2) 		10.6
(3) 		5.6
(-0.4) 		1.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8597
Sequence Type Exemplar sequence
Representative Public ID M116.3 NCBI
Target Description M116.3 /REP_DB=WormBase Gene ID /WP=CE21083 /GEN=mut-2 /TR=O44522 /GB=AAB94140.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000005100 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8400173:8403128:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005094 7/11 Cross Hyb Matching Probes None
GENEFINDER00000033680 4/11 Cross Hyb Matching Probes None
Y67H2A.3 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16863 hypothetical protein T13C2.1 - Caenorhabditis elegans 0.0
blast AAB94140 Hypothetical protein M116.3 [Caenorhabditis elegans] ref|NP_501429.2| M116.3 [Caenorhabditis elegans] 0.0
blast CAA84584 putative transposase [Caenorhabditis elegans] ref|NP_001023457.1| Y38F2AR.4 [Caenorhabditis elegans] gb|AAA20582.1| putative transposase [Caenorhabditis elegans] gb|AAU87814.1| Hypothetical protein Y38F2AR.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 5.7E-39
Pfam IPR004875 EMBL-EBI CENP-B protein 5.2E-76
Sequence
Target Sequence 
>C. ELEGANS:187909_AT
atcgaatgtatatagtggcgtaacgaagtccgataacgagttcagaaccttcccttgtca
gatcatcgacgccaggatgctgctttctccgccaaccgactgccgttttttttgttttct
ctgtaagtttgctctgtgttgttccgtttttcaaattcccctgtctcatcttggttccat
ggaagaagatggattcgacgccagggccctcctctccactccgaccgactcttctgattt
ttccctatttcccaacgatttgcagcttttcctggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGAATGTATATAGTGGCGTAACG 185 25 1686 Antisense
GTGGCGTAACGAAGTCCGATAACGA 601 485 1700 Antisense
GAAGTCCGATAACGAGTTCAGAACC 597 321 1710 Antisense
TAACGAGTTCAGAACCTTCCCTTGT 197 637 1719 Antisense
TTCCCTTGTCAGATCATCGACGCCA 688 697 1735 Antisense
GATCATCGACGCCAGGATGCTGCTT 238 421 1746 Antisense
CCTGTCTCATCTTGGTTCCATGGAA 121 267 1845 Antisense
GTCTCATCTTGGTTCCATGGAAGAA 512 469 1848 Antisense
TCCCTATTTCCCAACGATTTGCAGC 361 597 1927 Antisense
TTTCCCAACGATTTGCAGCTTTTCC 700 667 1933 Antisense
CAACGATTTGCAGCTTTTCCTGGCT 303 143 1938 Antisense
Sequence Source Affymetrix Proprietary Database