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[187908_at]

Description C14A4.2 /REP_DB=WormBase Gene ID /WP=CE24802 /GEN=dap-3 /TR=Q9TVM5 /GB=CAB60994.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 20      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 32      6grp_total > 33      4grp_total > 60      6grp_highest_sub > 01_02_03      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1642
1 2 3 4 range
A 1789.6
(1.7)
P 		2126
(3)
P 		1991.9
(2.5)
P 		596
(-3)
P 		1530
B 1872.7
(2.5)
P 		1980.3
(3)
P 		1969
(2.9)
P 		686.9
(-3)
P 		1293
C 1846.4
(2.5)
P 		1963.1
(3)
P 		1893.5
(2.7)
P 		483.9
(-3)
P 		1479
avr 1836.2
(2.2) 		2023.1
(3) 		1951.5
(2.7) 		588.9
(-3) 		1434

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 945
1 2 3 4 5 6 range
A 1472.5
(3)
P 		1475.2
(3)
P 		1321.1
(1)
P 		1209.3
(-0.4)
P 		1008.8
(-3)
P 		1052.7
(-2.4)
P 		466
B 1455.9
(0.8)
P 		1332.9
(-0.1)
P 		1749
(3)
P 		1364.8
(0.1)
P 		949.2
(-3)
P 		958.7
(-2.9)
P 		800
C 1287.1
(0.5)
P 		1406.9
(1.4)
P 		1628
(3)
P 		1298.8
(0.6)
P 		803.9
(-3)
P 		1030
(-1.4)
P 		824
avr 1405.2
(1.5) 		1405
(1.5) 		1566
(3) 		1291
(0.4) 		920.6
(-3) 		1013.8
(-2.1) 		645
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 651.6
(3)
P 		461.5
(1)
P 		520.7
(1.6)
P 		87.2
(-3)
P 		564
B 597.2
(3)
P 		489.1
(1.6)
P 		456.3
(1.1)
P 		146.4
(-3)
P 		451
C 611.2
(2.5)
P 		564.4
(2)
P 		659.9
(3)
P 		81.6
(-3)
P 		578
avr 620
(3) 		505
(1.7) 		545.6
(2.1) 		105.1
(-3) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 271.4
(-2.7)
P 		524.7
(3)
P 		287.7
(-2.3)
P 		306.7
(-1.9)
P 		304.4
(-1.9)
P 		256.3
(-3)
P 		268
B 506.6
(3)
P 		443.7
(0.5)
P 		424.7
(-0.3)
P 		361.5
(-2.8)
P 		385.7
(-1.9)
P 		357.5
(-3)
P 		149
C 477.1
(3)
P 		429.3
(1.7)
P 		414.4
(1.3)
P 		261.2
(-3)
P 		260.1
(-3)
P 		344.8
(-0.7)
P 		217
avr 418.4
(1.2) 		465.9
(3) 		375.6
(-0.5) 		309.8
(-3) 		316.7
(-2.7) 		319.5
(-2.6) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3886
Sequence Type Exemplar sequence
Representative Public ID C14A4.2 NCBI
Target Description C14A4.2 /REP_DB=WormBase Gene ID /WP=CE24802 /GEN=dap-3 /TR=Q9TVM5 /GB=CAB60994.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063879 NCBI Caenorhabditis elegans mammalian cell Death Associated Protein related family member (dap-3) (dap-3) mRNA, complete cds. 11/11 None
SNAP00000002483 ENSEMBL cdna:SNAP chromosome:CEL140:II:10581045:10582317:1 11/11 None
GENEFINDER00000002508 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10581045:10583987:1 11/11 None
C14A4.2 ENSEMBL cdna:known chromosome:CEL140:II:10581044:10582429:1 gene:C14A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10581041-10582314(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dap-3
Ensembl C14A4.2
Entrez Gene 174631 Entrez gene
SwissProt Q9TVM5 EMBL-EBI
WormBase CE24802 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592519_AT similar to death-associated protein 3 cfa
CANINE_2:CFA.10666.1.S1_AT similar to death-associated protein 3 cfa
CANINE_2:CFA.10666.1.S1_S_AT similar to death-associated protein 3 cfa
CANINE_2:CFAAFFX.25892.1.S1_AT similar to death-associated protein 3 cfa
DROSOPHILA_2:1632771_AT mitochondrial ribosomal protein S29 dm
DROSGENOME1:154935_AT mitochondrial ribosomal protein S29 dm
CHICKEN:GGA.5675.3.S1_A_AT death associated protein 3 gga
HG-U133A:208822_S_AT death associated protein 3 hs
HG-U133_PLUS_2:208822_S_AT death associated protein 3 hs
HG-FOCUS:208822_S_AT death associated protein 3 hs
HG-U133A_2:208822_S_AT death associated protein 3 hs
HG-U95AV2:1356_AT death associated protein 3 hs
HC-G110:1356_AT death associated protein 3 hs
HUGENEFL:U18321_AT death associated protein 3 hs
U133_X3P:G603763_3P_A_AT death associated protein 3 hs
HG-U95C:52048_AT death associated protein 3 hs
HG-U95AV2:40413_AT Death associated protein 3 hs
HG-U133_PLUS_2:244803_AT Death associated protein 3 hs
HG-U133B:244803_AT Death associated protein 3 hs
HG-U95E:68837_AT Death associated protein 3 hs
HG-U95D:71209_AT Death associated protein 3 hs
HU35KSUBC:RC_N68032_AT Death associated protein 3 hs
U133_X3P:HS.260702.0.A1_3P_AT Death associated protein 3 hs
MG-U74AV2:94524_AT death associated protein 3 mm
MOE430A:1450848_AT death associated protein 3 mm
MOUSE430A_2:1450848_AT death associated protein 3 mm
MOUSE430_2:1450848_AT death associated protein 3 mm
MU19KSUBA:TC18768_F_AT Death associated protein 3, mRNA (cDNA clone MGC:28659 IMAGE:4235517) mm
MU19KSUBB:TC31563_AT Death associated protein 3, mRNA (cDNA clone MGC:28659 IMAGE:4235517) mm
RG-U34B:RC_AA957602_G_AT death associated protein 3 (predicted) rn
RG-U34B:RC_AA964664_AT death associated protein 3 (predicted) rn
RG-U34B:RC_AA957602_AT death associated protein 3 (predicted) rn
RAE230A:1389535_AT death associated protein 3 (predicted) rn
RAT230_2:1389535_AT death associated protein 3 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6915 apoptosis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5761 mitochondrial ribosome inferred from electronic annotation QuickGO AmiGO
15935 small ribosomal subunit inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60994 Hypothetical protein C14A4.2 [Caenorhabditis elegans] ref|NP_496280.1| mammalian cell Death Associated Protein related family member (dap-3) [Caenorhabditis elegans] gb|AAD20727.1| unknown [Caenorhabditis elegans] 0.0
blast T19244 hypothetical protein C14A4.2 - Caenorhabditis elegans 0.0
blast CAE59648 Hypothetical protein CBG03062 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187908_AT
gattctcggagagttgctcactgaaagagattatgaatggtcgaaaagtgaacgaacgtt
gaaaggaaaacctatcactgaaattattgaaatgggaatctctgctccgttccttgccag
tgattgtgttggtgcaatcttccgagagctccgacgccacgcaaaagatgacaaactgaa
ggttctagtggcgattgatgatgcgaattctctgtggggaaaaactttggtgaaacgagc
tgatagaacctatgcaccaccttcggatcttactcttgttgtacattaccggcgaatgat
cgaaaatgattggactaatggatgtgttctgatggttgcagataagaaagaggttgcaga
cgccagggatcatctcggagtctccaggcacactccattggaattgtttggagaagaagg
atttgaatatgttgagccattcgttccaattgaaacgtcaaattatacggaagccgaaac
agatgcaatctataattactatgtgaacaagaactggttagcatcaaaagcagctcgtag
cgaggaaggaaggaaacaacttatgcatctcagcgcattcaatccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTCGGAGAGTTGCTCACTGAA 143 433 522 Antisense
TGTGTTGGTGCAATCTTCCGAGAGC 426 555 646 Antisense
GCTCCGACGCCACGCAAAAGATGAC 571 297 669 Antisense
TGATGATGCGAATTCTCTGTGGGGA 193 567 717 Antisense
GCTGATAGAACCTATGCACCACCTT 639 295 760 Antisense
ACCTTCGGATCTTACTCTTGTTGTA 390 87 780 Antisense
AGAGGTTGCAGACGCCAGGGATCAT 268 69 870 Antisense
GATCATCTCGGAGTCTCCAGGCACA 186 421 889 Antisense
TCTCCAGGCACACTCCATTGGAATT 4 609 902 Antisense
ATGTTGAGCCATTCGTTCCAATTGA 452 47 950 Antisense
TGCATCTCAGCGCATTCAATCCATA 107 579 1085 Antisense
Sequence Source Affymetrix Proprietary Database