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[187906_at]

Description F31F6.5 /REP_DB=WormBase Gene ID /WP=CE05777 /GEN=ptr-7 /TR=Q19945 /GB=CAA93751.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 80      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 71      6grp_total > 61      4grp_total > 57      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 02_03_04_05      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 70
(-3)
P 		492.2
(2.9)
P 		495.8
(3)
P 		123.5
(-2.2)
P 		426
B 140.3
(-2.6)
P 		498.4
(3)
P 		392.6
(1.3)
P 		115.8
(-3)
P 		383
C 156.4
(-2.7)
P 		443.6
(2.8)
P 		454.6
(3)
P 		140.7
(-3)
P 		314
avr 122.2
(-3) 		478.1
(3) 		447.7
(2.5) 		126.7
(-2.9) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 241.2
(-1.2)
P 		355.7
(2)
P 		355.8
(2)
P 		390.8
(3)
P 		357.9
(2.1)
P 		179.3
(-3)
P 		212
B 289.6
(-0.8)
P 		345.6
(0.4)
P 		350
(0.5)
P 		474.6
(3)
P 		331.9
(0.1)
P 		179.8
(-3)
P 		295
C 223.2
(-1.2)
P 		354.3
(1.9)
P 		400.2
(3)
P 		343.6
(1.7)
P 		291.2
(0.4)
P 		144.5
(-3)
P 		256
avr 251.3
(-0.9) 		351.9
(1.7) 		368.7
(2.1) 		403
(3) 		327
(1.1) 		167.9
(-3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 25.5
(-2.6)
P 		106.8
(1.8)
P 		129.6
(3)
P 		18.1
(-3)
P 		112
B 44.7
(-1.8)
P 		123.1
(3)
P 		91
(1)
P 		24.7
(-3)
P 		98
C 51.8
(-1.7)
P 		127.5
(1.6)
P 		158.4
(3)
P 		23.7
(-3)
P 		135
avr 40.7
(-1.9) 		119.1
(2.6) 		126.3
(3) 		22.2
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 44.5
(-2.9)
P 		126.5
(3)
P 		77.5
(-0.5)
P 		99.1
(1)
P 		108
(1.7)
P 		43.6
(-3)
P 		83
B 100.8
(-0)
P 		115
(1.2)
P 		85
(-1.4)
P 		125.7
(2.2)
P 		134.8
(3)
P 		67.1
(-3)
P 		68
C 82.7
(0.4)
P 		108.1
(3)
P 		101.9
(2.4)
P 		69.1
(-0.9)
P 		94.2
(1.6)
P 		48.4
(-3)
P 		60
avr 76
(-0.8) 		116.5
(3) 		88.1
(0.3) 		98
(1.3) 		112.3
(2.6) 		53
(-3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187906_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17654
Sequence Type Exemplar sequence
Representative Public ID F31F6.5 NCBI
Target Description F31F6.5 /REP_DB=WormBase Gene ID /WP=CE05777 /GEN=ptr-7 /TR=Q19945 /GB=CAA93751.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078071 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-6) (daf-6) mRNA, complete cds. 11/11 None
GENEFINDER00000015876 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14881455:14894058:1 10/11 None
SNAP00000015868 ENSEMBL cdna:SNAP chromosome:CEL140:X:14888412:14894058:1 10/11 None
F31F6.5 ENSEMBL cdna:known chromosome:CEL140:X:14888412:14894177:1 gene:F31F6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14888411-14894058(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol daf-6
Ensembl F31F6.5
Entrez Gene 181584 Entrez gene
WormBase CE38955 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_510472 abnormal DAuer Formation family member (daf-6) [Caenorhabditis elegans] 0.0
blast CAA93751 Hypothetical protein F31F6.5 [Caenorhabditis elegans] 0.0
blast CAE63242 Hypothetical protein CBG07607 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0068
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0068
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.099
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510472.1 10 22-44,264-286,306-328,414-436,561-583,786-808,818-840,847-869,894-916,921-943
F31F6.5 10 22-44,264-286,306-328,414-436,561-583,786-808,818-840,847-869,894-916,921-943
GENEFINDER00000015876 12 199-221,441-460,480-502,507-529,549-571,578-600,723-745,922-944,954-976,983-1005,1020-1042,1054-1076
SNAP00000015868 12 22-44,264-283,303-325,330-352,372-394,401-423,546-568,745-767,777-799,806-828,843-865,877-899
Sequence
Target Sequence 
>C. ELEGANS:187906_AT
aagttctcacagttgctatgctcagaaaaatattccaaagcttgcctttccatttgccga
ccaataccttattattctgcctgctacaatacaaaacgttgtcatatctcttctttgcat
ggccgtcgtatccttcctgctagtgcctagtcttccatcaggatttgtcatttttgtttc
catcgtgtctatcaacatcggcgtatttggttatatgacgttgtggggcgtgaacttgga
tgcagtcagcatgatatcgattatcatgagcatcgggtttgccgtcgacctttccgcaca
catcatttacgcatttgtgacgtcacacggtgatacaaagcaacgagtcattggagctct
agaaacgttggggtggccgatatttcagggtgcctcatcaaccattgctggaatctccat
actttacacagtggacgcttacatcattcttgtatttttcaaaacgatctggctcacaat
gctcatcggcgccattcatggactgttcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCTCACAGTTGCTATGCTCAG 122 157 2301 Antisense
TACCTTATTATTCTGCCTGCTACAA 700 649 2365 Antisense
AAACGTTGTCATATCTCTTCTTTGC 284 127 2394 Antisense
TAGTGCCTAGTCTTCCATCAGGATT 531 651 2441 Antisense
TGTCATTTTTGTTTCCATCGTGTCT 196 559 2466 Antisense
CATGAGCATCGGGTTTGCCGTCGAC 637 209 2565 Antisense
CTTTCCGCACACATCATTTACGCAT 352 223 2590 Antisense
ATTTCAGGGTGCCTCATCAACCATT 677 15 2682 Antisense
CACAGTGGACGCTTACATCATTCTT 68 197 2727 Antisense
AAACGATCTGGCTCACAATGCTCAT 193 127 2762 Antisense
GGCGCCATTCATGGACTGTTCTTCA 43 543 2788 Antisense
Sequence Source Affymetrix Proprietary Database