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[187905_at]

Description F53A2.4 /REP_DB=WormBase Gene ID /WP=CE16096 /GEN=nud-1 /TR=O45549 /GB=CAB04452.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 75      6grp_total > 75      4grp_total > 60      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 652
1 2 3 4 range
A 811.4
(3)
P 		780.8
(2.4)
P 		777.8
(2.3)
P 		525.1
(-3)
P 		286
B 864.9
(0.8)
P 		747.7
(-0.3)
P 		1105.8
(3)
P 		454.2
(-3)
P 		652
C 902.8
(1.2)
P 		841.1
(0.5)
P 		1063.6
(3)
P 		532.5
(-3)
P 		531
avr 859.7
(1.5) 		789.9
(0.6) 		982.4
(3) 		503.9
(-3) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 765.8
(-1.9)
P 		719.2
(-3)
P 		970.2
(3)
P 		908.9
(1.5)
P 		758
(-2.1)
P 		818.8
(-0.6)
P 		251
B 760.3
(-3)
P 		814.2
(-2.1)
P 		979.8
(0.8)
P 		840.1
(-1.6)
P 		1068.9
(2.3)
P 		1108.3
(3)
P 		348
C 693.8
(-3)
P 		757.4
(-1.7)
P 		745.6
(-2)
P 		845
(0)
P 		726.7
(-2.3)
P 		993.2
(3)
P 		299
avr 740
(-3) 		763.6
(-2.4) 		898.5
(1.1) 		864.7
(0.2) 		851.2
(-0.1) 		973.4
(3) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 295.4
(3)
P 		169.5
(-0.5)
P 		203.3
(0.5)
P 		76.9
(-3)
P 		219
B 275.8
(3)
P 		184.7
(-0.1)
P 		256.2
(2.3)
P 		96.8
(-3)
P 		179
C 298.9
(1.5)
P 		241.8
(0.2)
P 		370.7
(3)
P 		89.8
(-3)
P 		281
avr 290
(3) 		198.7
(0.3) 		276.7
(2.6) 		87.8
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 141.2
(-3)
P 		255.8
(3)
P 		211.3
(0.7)
P 		230.5
(1.7)
P 		228.7
(1.6)
P 		199.4
(0)
P 		115
B 264.6
(-1.8)
P 		271
(-1.6)
P 		237.9
(-2.6)
P 		222.5
(-3)
P 		434.3
(3)
P 		413.3
(2.4)
P 		212
C 257.2
(0.2)
P 		231.1
(-0.7)
P 		189.8
(-2.3)
P 		169.9
(-3)
P 		235.2
(-0.6)
P 		332.5
(3)
P 		163
avr 221
(-2.3) 		252.6
(-0.5) 		213
(-2.7) 		207.6
(-3) 		299.4
(2.1) 		315.1
(3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7100
Sequence Type Exemplar sequence
Representative Public ID F53A2.4 NCBI
Target Description F53A2.4 /REP_DB=WormBase Gene ID /WP=CE16096 /GEN=nud-1 /TR=O45549 /GB=CAB04452.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067348 NCBI Caenorhabditis elegans Aspergillus NUclear Division related family member (nud-1) (nud-1) mRNA, complete cds. 11/11 None
SNAP00000020108 ENSEMBL cdna:SNAP chromosome:CEL140:III:13341046:13342055:1 11/11 None
GENEFINDER00000020119 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13341046:13342055:1 11/11 None
F53A2.4 ENSEMBL cdna:known chromosome:CEL140:III:13341043:13342108:1 gene:F53A2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13341041-13342051(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nud-1
Ensembl F53A2.4
Entrez Gene 176754 Entrez gene
SwissProt O45549 EMBL-EBI
WormBase CE16096 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248258_AT nuclear movement family protein at
CANINE:1600546_AT similar to nuclear distribution gene C homolog (A. nidulans) cfa
CANINE:1598237_AT similar to nuclear distribution gene C homolog (A. nidulans) cfa
CANINE:1587496_AT similar to nuclear distribution gene C homolog (A. nidulans) cfa
CANINE_2:CFA.16388.2.A1_S_AT similar to nuclear distribution gene C homolog (A. nidulans) cfa
CANINE_2:CFA.6325.1.S1_A_AT similar to nuclear distribution gene C homolog (A. nidulans) cfa
CANINE_2:CFA.6325.1.S1_S_AT similar to nuclear distribution gene C homolog (A. nidulans) cfa
CANINE_2:CFA.6325.2.S1_AT similar to nuclear distribution gene C homolog (A. nidulans) cfa
DROSGENOME1:148915_AT dm
DROSOPHILA_2:1629475_AT dm
CHICKEN:GGAAFFX.12856.1.S1_S_AT nuclear distribution gene C homolog (A. nidulans) gga
HG-U133A:201173_X_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U133A_2:201173_X_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U133_PLUS_2:201173_X_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U133_PLUS_2:210575_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U133A:210575_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U133A_2:210575_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U133_PLUS_2:210574_S_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-FOCUS:210574_S_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U133A:210574_S_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U133A_2:210574_S_AT nuclear distribution gene C homolog (A. nidulans) hs
HU35KSUBC:RC_AA620413_S_AT nuclear distribution gene C homolog (A. nidulans) hs
HU35KSUBC:RC_AA133887_AT nuclear distribution gene C homolog (A. nidulans) hs
U133_X3P:G12005492_3P_S_AT nuclear distribution gene C homolog (A. nidulans) hs
HG-U95AV2:35836_AT nuclear distribution gene C homolog (A. nidulans) hs
MOUSE430_2:1419471_A_AT nuclear distribution gene C homolog (Aspergillus) mm
MOE430A:1419471_A_AT nuclear distribution gene C homolog (Aspergillus) mm
MOUSE430A_2:1419471_A_AT nuclear distribution gene C homolog (Aspergillus) mm
MU11KSUBB:Y15522_S_AT nuclear distribution gene C homolog (Aspergillus) mm
MG-U74AV2:101033_AT nuclear distribution gene C homolog (Aspergillus) mm
MOE430A:1419472_S_AT nuclear distribution gene C homolog (Aspergillus) mm
MOUSE430A_2:1419472_S_AT nuclear distribution gene C homolog (Aspergillus) mm
MOUSE430_2:1419472_S_AT nuclear distribution gene C homolog (Aspergillus) mm
RG-U34A:X82445_AT nuclear distribution gene C homolog (Aspergillus) rn
RAE230A:1368436_AT nuclear distribution gene C homolog (Aspergillus) rn
RAT230_2:1368436_AT nuclear distribution gene C homolog (Aspergillus) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04452 Hypothetical protein F53A2.4 [Caenorhabditis elegans] ref|NP_499749.1| Aspergillus NUclear Division related family member (nud-1) [Caenorhabditis elegans] gb|AAF82633.1| NUD-1 [Caenorhabditis elegans] 1.0E-151
blast CAE56549 Hypothetical protein CBG24281 [Caenorhabditis briggsae] 1.0E-121
blast XP_391855 PREDICTED: similar to hypothetical protein [Apis mellifera] 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR005307 EMBL-EBI Nuclear movement protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187905_AT
ggtgcggatcttgccaaatatcaatggactcaaacactccaagaactcgaggtgaagatt
ccaattgctgctggatttgctatcaaatctcgtgacgttgtcgtcaaaatagagaagact
tcagtatctgtcggcctgaagaatcaagctccgattgtcgatggaaagttgcctcacgcc
attaaagtagaaaattgcaactgggtaatcgaaaacgggaaagcgattgtcctaactctc
gagaagatcaatgatatggaatggtggaatcgattccttgattccgatcctccaatcaat
actaaggaagtgaagccagagaactcgaaattgagcgacttggatggagagacacgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCGGATCTTGCCAAATATCAAT 80 501 475 Antisense
GGACTCAAACACTCCAAGAACTCGA 410 525 500 Antisense
CAATTGCTGCTGGATTTGCTATCAA 388 179 536 Antisense
TATCAAATCTCGTGACGTTGTCGTC 114 659 555 Antisense
GAAGACTTCAGTATCTGTCGGCCTG 64 341 588 Antisense
CTGTCGGCCTGAAGAATCAAGCTCC 191 239 602 Antisense
GAATCAAGCTCCGATTGTCGATGGA 245 325 615 Antisense
GAAAGTTGCCTCACGCCATTAAAGT 519 359 638 Antisense
GAAAGCGATTGTCCTAACTCTCGAG 457 359 693 Antisense
AATCGATTCCTTGATTCCGATCCTC 395 169 742 Antisense
GCGACTTGGATGGAGAGACACGTGC 168 289 809 Antisense
Sequence Source Affymetrix Proprietary Database