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[187904_at]

Description T23G4.1 /REP_DB=WormBase Gene ID /WP=CE16453 /GEN=tlp-1 /TR=O18124 /GB=CAB05282.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 45      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_total > 46      4grp_total > 19      6grp_cgc > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 109.1
(-2.2)
P 		97.1
(-2.8)
P 		94
(-3)
P 		208.6
(3)
P 		115
B 115.3
(-1.8)
P 		143.6
(1.6)
P 		105.2
(-3)
P 		155.1
(3)
P 		50
C 83.3
(-3)
P 		149.2
(-0.7)
P 		82.7
(-3)
P 		257.2
(3)
P 		175
avr 102.6
(-2.5) 		130
(-1.1) 		94
(-3) 		207
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 170.3
(3)
P 		115
(-0.3)
P 		135.5
(0.9)
P 		69.2
(-3)
P 		76.3
(-2.6)
P 		135.3
(0.9)
P 		101
B 84.8
(-2.2)
P 		152.2
(3)
P 		83.5
(-2.3)
P 		129.3
(1.2)
P 		73.7
(-3)
P 		126.5
(1)
P 		79
C 41.5
(-2.9)
P 		181.3
(3)
P 		88.2
(-0.9)
A 		97.3
(-0.6)
A 		39.4
(-3)
P 		95.5
(-0.6)
P 		142
avr 98.9
(-0.5) 		149.5
(3) 		102.4
(-0.3) 		98.6
(-0.5) 		63.1
(-3) 		119.1
(0.9) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 39.7
(3)
P 		21.1
(-3)
P 		24.6
(-1.9)
P 		30.5
(0)
P 		19
B 36.8
(3)
P 		35.5
(2.4)
P 		24.4
(-3)
P 		33.1
(1.2)
P 		12
C 27.6
(-3)
P 		42.9
(2.8)
P 		28.8
(-2.5)
P 		43.4
(3)
P 		16
avr 34.7
(2.4) 		33.2
(1.5) 		25.9
(-3) 		35.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 31.4
(0.6)
P 		40.9
(3)
P 		29.5
(0.1)
P 		17.5
(-3)
P 		23
(-1.6)
P 		32.9
(0.9)
P 		23
B 29.5
(-1.2)
P 		50.7
(3)
P 		20.3
(-3)
P 		34.2
(-0.3)
P 		30
(-1.1)
P 		47.2
(2.3)
P 		30
C 15.4
(-2.6)
P 		55.3
(3)
P 		22.4
(-1.6)
A 		19.6
(-2)
A 		12.7
(-3)
P 		32
(-0.3)
P 		43
avr 25.4
(-2.2) 		49
(3) 		24.1
(-2.5) 		23.8
(-2.6) 		21.9
(-3) 		37.4
(0.4) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10082
Sequence Type Exemplar sequence
Representative Public ID T23G4.1 NCBI
Target Description T23G4.1 /REP_DB=WormBase Gene ID /WP=CE16453 /GEN=tlp-1 /TR=O18124 /GB=CAB05282.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070246(11), AY046083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070246 NCBI Caenorhabditis elegans T lineage defect, LePtoderan tail family member (tlp-1) (tlp-1) mRNA, complete cds. 11/11 None
AY046083 NCBI Caenorhabditis elegans zinc finger protein TLP-1 (tlp-1) mRNA, complete cds. 11/11 None
SNAP00000014427 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13701743:13703924:-1 11/11 None
GENEFINDER00000014432 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13701438:13703125:-1 10/11 None
T23G4.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:13701184:13703926:-1 gene:T23G4.1 11/11 None
T23G4.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:13701209:13703996:-1 gene:T23G4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13701748-13703930(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tlp-1
Ensembl T23G4.1
Entrez Gene 178338 Entrez gene
SwissProt O18124 EMBL-EBI
WormBase CE16453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05282 Hypothetical protein T23G4.1 [Caenorhabditis elegans] ref|NP_502647.1| T lineage defect, LePtoderan tail family member (tlp-1) [Caenorhabditis elegans] gb|AAL02420.1| zinc finger protein TLP-1 [Caenorhabditis elegans] 1.0E-147
blast CAB05282 Hypothetical protein T23G4.1 [Caenorhabditis elegans] ref|NP_502647.1| T lineage defect, LePtoderan tail family member (tlp-1) [Caenorhabditis elegans] gb|AAL02420.1| zinc finger protein TLP-1 [Caenorhabditis elegans] 1.0E-120
blast CAE74582 Hypothetical protein CBG22351 [Caenorhabditis briggsae] 8.0E-83
Sequence
Target Sequence 
>C. ELEGANS:187904_AT
atgatgcgtcaaccatgtgccaatccggcatgtgtgcagtgtccaagtagtagctcaaat
gctgctaaaaatggacaaatgactgctgaaatgatgtcacagtttgcagcgcatccgttg
ttctcaatgtatgctggaatgatgccaggagttccaacctcatcctaccaagctcttctc
gctgcctctgcagcagcttcaacctcagcaggacctactgattactcgaatgtcgcatct
acctcaaaagcctctccacaaccaaaaccaacagcacaaaagtcgcaaaaatcagcgaaa
ttcccctgcaactgggtggattctgatgtaccatgcggaaaagttttcgatgaggaaaat
gagttggcaagccatgttaagaaaatgcacgcgccatcaccatcaagctccgcatcttct
gaacaatcaacatcaacgggaaaagcttcaagatcctctacaacaactccacatcgattt
aatccatacggaaaaccagttgctccagcaccaccaacaatgcaacaaatgggtatgaat
atggcaatgaatccccttgttttaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATGCGTCAACCATGTGCCAATC 25 47 454 Antisense
GCCAATCCGGCATGTGTGCAGTGTC 42 279 472 Antisense
GATGTCACAGTTTGCAGCGCATCCG 579 409 546 Antisense
TGATGCCAGGAGTTCCAACCTCATC 393 565 593 Antisense
TCTGCAGCAGCTTCAACCTCAGCAG 427 609 640 Antisense
CAGGACCTACTGATTACTCGAATGT 221 201 662 Antisense
GAATGTCGCATCTACCTCAAAAGCC 115 333 681 Antisense
AAATCAGCGAAATTCCCCTGCAACT 375 117 742 Antisense
TTCAAGATCCTCTACAACAACTCCA 340 685 900 Antisense
AACAACTCCACATCGATTTAATCCA 324 135 915 Antisense
GCAATGAATCCCCTTGTTTTACCAT 548 319 997 Antisense
Sequence Source Affymetrix Proprietary Database