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[187902_at]

Description R144.1 /REP_DB=WormBase Gene ID /WP=CE02031 /GEN=klp-6 /TR=Q09997 /GB=AAK21452.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 12      6grp_cgc > 42      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 11.5
(3)
A 		4.9
(-2.4)
A 		4.2
(-3)
A 		7.1
(-0.6)
A 		7
B 3.8
(-3)
A 		14.3
(3)
A 		9.5
(0.3)
A 		5.1
(-2.3)
A 		11
C 23.2
(-0.7)
A 		11.1
(-2.4)
A 		6.6
(-3)
A 		50.2
(3)
A 		44
avr 12.8
(-0.4) 		10.1
(-1.6) 		6.8
(-3) 		20.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.9
(2.3)
A 		15.2
(3)
A 		7
(-1.5)
A 		6.4
(-1.8)
A 		4.3
(-3)
A 		6.7
(-1.7)
A 		11
B 14.4
(0.9)
A 		21.1
(3)
A 		9.2
(-0.6)
A 		4.1
(-2.2)
A 		14.6
(1)
A 		1.5
(-3)
A 		20
C 9.1
(0.5)
A 		4.7
(-3)
A 		8.5
(-0)
A 		4.7
(-3)
A 		10.1
(1.3)
A 		12.3
(3)
A 		8
avr 12.5
(2.2) 		13.7
(3) 		8.2
(-0.8) 		5.1
(-3) 		9.7
(0.2) 		6.8
(-1.8) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.2
(3)
A 		1.1
(-2.8)
A 		1.1
(-2.8)
A 		1
(-3)
A 		3
B 1.2
(-2.8)
A 		3.5
(3)
A 		2.2
(-0.3)
A 		1.1
(-3)
A 		2
C 7.7
(2.2)
A 		3.2
(-2.1)
A 		2.3
(-3)
A 		8.5
(3)
A 		6
avr 4.4
(3) 		2.6
(-1.3) 		1.9
(-3) 		3.5
(0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.6
(-1.1)
A 		5.4
(3)
A 		1.5
(-2.7)
A 		1.6
(-2.6)
A 		1.3
(-3)
A 		1.6
(-2.6)
A 		4
B 5
(1.1)
A 		7
(3)
A 		2.2
(-1.5)
A 		1.1
(-2.5)
A 		5.9
(2)
A 		0.6
(-3)
A 		6
C 3.4
(1.6)
A 		1.4
(-2.2)
A 		2.2
(-0.7)
A 		1
(-3)
A 		3.3
(1.5)
A 		4.1
(3)
A 		3
avr 3.7
(1.4) 		4.6
(3) 		2
(-1.6) 		1.2
(-3) 		3.5
(1.1) 		2.1
(-1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6223
Sequence Type Exemplar sequence
Representative Public ID R144.1 NCBI
Target Description R144.1 /REP_DB=WormBase Gene ID /WP=CE02031 /GEN=klp-6 /TR=Q09997 /GB=AAK21452.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065668 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-6) (klp-6) mRNA, complete cds. 11/11 None
R144.1 ENSEMBL cdna:known chromosome:CEL140:III:5030891:5037587:1 gene:R144.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017861 7/11 Cross Hyb Matching Probes None
SNAP00000017850 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5030909-5036305(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol klp-6
Ensembl R144.1
Entrez Gene 175683 Entrez gene
SwissProt Q09997 EMBL-EBI
WormBase CE02031 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583446_AT similar to Kinesin-Like Protein family member (klp-6) cfa
CANINE_2:CFA.12415.1.A1_AT similar to Kinesin-Like Protein family member (klp-6) cfa
CANINE_2:CFAAFFX.24380.1.S1_AT similar to Kinesin-Like Protein family member (klp-6) cfa
CHICKEN:GGAAFFX.6724.1.S1_AT similar to kinesin-like protein (103.5 kD) (klp-6) gga
MOE430B:1444916_AT PREDICTED: similar to kinesin-like protein (103.5 kD) (klp-6) [Mus musculus], mRNA sequence mm
MOUSE430_2:1444916_AT PREDICTED: similar to kinesin-like protein (103.5 kD) (klp-6) [Mus musculus], mRNA sequence mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5875 microtubule associated complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498069 Kinesin-Like Protein family member (klp-6) [Caenorhabditis elegans] gb|AAK21452.1| Kinesin-like protein protein 6 [Caenorhabditis elegans] dbj|BAA88682.1| kinesin like protein KLP-6 [Caenorhabditis elegans] 0.0
blast CAE75111 Hypothetical protein CBG23036 [Caenorhabditis briggsae] 0.0
blast XP_785926 PREDICTED: similar to kinesin-like protein (103.5 kD) (klp-6) [Strongylocentrotus purpuratus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 6.4E-6
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187902_AT
cctactaacagtaggtctctccccgtgttccacaacaggaaaagaacttcgaggagaata
tgttgaagatcctgatcaacttatcggaaagaacattgctttcaaagtgaaagtaatttc
agctgtcggtttaccgagacgaattttaaagtcaaattgcaaatatcgattttttggatc
aaaaaagatgacaaccacggcaactgtatccggaaatactccagcctacggtcacgaaga
aacatttcaatttaagccggtcacaaaagaagtagccgattatctagcaaattccaattt
atatatcacattctggggaacacaaagacctcgtggggcaagtagtcgaaagaatagtat
atctacaattggaagtaatgaagcaagagaaggacccaataaagcgaagcgtgttgagag
attggtgcatcaagcgaaaacttcggagaatcgaaacatttctgtaaaagccctggagac
agtactcaaaggtgttgatgacaacgagaatcgaaagacacgcaaacagtcgatgaagaa
ggccggttcgacgacaatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTACTAACAGTAGGTCTCTCCCCG 599 267 2202 Antisense
TCTCCCCGTGTTCCACAACAGGAAA 65 611 2219 Antisense
GTAATTTCAGCTGTCGGTTTACCGA 2 461 2314 Antisense
AAGATGACAACCACGGCAACTGTAT 648 151 2386 Antisense
TGTATCCGGAAATACTCCAGCCTAC 203 561 2406 Antisense
CTCCAGCCTACGGTCACGAAGAAAC 417 235 2420 Antisense
ACATTTCAATTTAAGCCGGTCACAA 466 105 2443 Antisense
GTAGCCGATTATCTAGCAAATTCCA 335 457 2473 Antisense
GGGAACACAAAGACCTCGTGGGGCA 433 493 2517 Antisense
GAAACATTTCTGTAAAAGCCCTGGA 401 355 2654 Antisense
GAAGGCCGGTTCGACGACAATCAAA 534 331 2739 Antisense
Sequence Source Affymetrix Proprietary Database