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[187901_s_at]

Description ZC13.4 /REP_DB=WormBase Gene ID /WP=CE14990 /GEN=mab-7 /TR=Q94311 /GB=AAB07582.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      4grp_high_8_8 > 55      6grp_total > 82      4grp_total > 56      6grp_cgc > 87      6grp_high1_sub > 04      6grp_cgc_sub > 05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 890
1 2 3 4 range
A 43.8
(-3)
P 		555.7
(0.5)
P 		933.7
(3)
P 		144.3
(-2.3)
P 		890
B 75
(-3)
P 		662.1
(1.5)
P 		860.1
(3)
P 		155.1
(-2.4)
P 		785
C 91.6
(-3)
M 		600.5
(0.8)
P 		895.7
(3)
P 		101.9
(-2.9)
P 		804
avr 70.1
(-3) 		606.1
(0.9) 		896.5
(3) 		133.8
(-2.5) 		826

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 973
1 2 3 4 5 6 range
A 119
(-3)
A 		435.1
(-0.9)
P 		374.6
(-1.3)
P 		699.7
(0.9)
P 		1021.4
(3)
P 		236.4
(-2.2)
P 		902
B 70.3
(-3)
P 		404.2
(-0.7)
P 		346.7
(-1.1)
P 		950.1
(3)
P 		790.9
(1.9)
P 		263.7
(-1.7)
P 		880
C 55.2
(-3)
A 		505.6
(-0.2)
P 		449.8
(-0.6)
P 		1028.3
(3)
P 		907.3
(2.3)
P 		231.4
(-1.9)
P 		973
avr 81.5
(-3) 		448.3
(-0.3) 		390.4
(-0.8) 		892.7
(2.9) 		906.5
(3) 		243.8
(-1.8) 		825
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 16
(-3)
P 		120.6
(-0.2)
P 		244.1
(3)
P 		21.1
(-2.9)
P 		228
B 23.9
(-3)
P 		163.5
(1.8)
P 		199.3
(3)
P 		33
(-2.7)
P 		175
C 30.3
(-2.7)
M 		172.6
(0.2)
P 		312.2
(3)
P 		17.2
(-3)
P 		295
avr 23.4
(-3) 		152.2
(0.4) 		251.9
(3) 		23.8
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 21.9
(-3)
A 		154.7
(-0.2)
P 		81.6
(-1.7)
P 		177.4
(0.3)
P 		308.2
(3)
P 		57.6
(-2.3)
P 		286
B 24.5
(-3)
P 		134.6
(-0.8)
P 		84.2
(-1.8)
P 		251.6
(1.6)
P 		321.3
(3)
P 		98.3
(-1.5)
P 		297
C 20.5
(-3)
A 		154.3
(-0.1)
P 		114.5
(-0.9)
P 		206.8
(1.1)
P 		293.6
(3)
P 		77.5
(-1.7)
P 		273
avr 22.3
(-3) 		147.9
(-0.4) 		93.4
(-1.5) 		211.9
(1) 		307.7
(3) 		77.8
(-1.8) 		285
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187901_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18139
Sequence Type Exemplar sequence
Representative Public ID ZC13.4 NCBI
Target Description ZC13.4 /REP_DB=WormBase Gene ID /WP=CE14990 /GEN=mab-7 /TR=Q94311 /GB=AAB07582.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075773(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075773 NCBI Caenorhabditis elegans Male ABnormal family member (mab-7) (mab-7) mRNA, complete cds. 11/11 None
GENEFINDER00000043707 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:892469:897942:-1 11/11 None
ZC13.4 ENSEMBL cdna:known chromosome:CEL140:X:892240:896714:-1 gene:ZC13.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043702 1/11 Cross Hyb Matching Probes None
SNAP00000043703 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:892468-896714(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mab-7
Ensembl ZC13.4
Entrez Gene 180440 Entrez gene
SwissProt Q95Q39 EMBL-EBI
WormBase CE14990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL13330 Male abnormal protein 7 [Caenorhabditis elegans] ref|NP_508174.1| Male ABnormal family member (mab-7) [Caenorhabditis elegans] 1.0E-160
blast AAW59416 MAB-7 [Caenorhabditis elegans] 1.0E-152
blast AAW59416 MAB-7 [Caenorhabditis elegans] 1.0E-151
blast AAL13330 Male abnormal protein 7 [Caenorhabditis elegans] ref|NP_508174.1| Male ABnormal family member (mab-7) [Caenorhabditis elegans] 1.0E-151
blast CAE63604 Hypothetical protein CBG08095 [Caenorhabditis briggsae] 1.0E-147
blast CAE63604 Hypothetical protein CBG08095 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-7
Sequence
Target Sequence 
>C. ELEGANS:187901_S_AT
agacaaatgccacacaattctcactcaaaccaacttctttgacgtcaactgtgctatatc
ctgcaaaatgtgctctcctgacccaaactacgtagcccctgaaattccacttgcaccagc
tctcgagccaatgcaatttttcttgggaaaatggcattcacgagcttcgaaaggcttgag
attccccactgatttgtacgatactgagtatgaggagataattgatattgctccagcaaa
tgttccaatgttcggaccaccatccttgaatttcacaagcacatcttggtttggagatga
tacacgtgttgtgcacggttttatcactctcaagccaaactcctttccaccagaggtcgc
catcctcagtactagtaatgaaggactcaacatgatcgaactaggcactttgaagcatca
cgtgctcacattgaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACAAATGCCACACAATTCTCACT 559 71 255 Antisense
AAACCAACTTCTTTGACGTCAACTG 515 125 281 Antisense
GACGTCAACTGTGCTATATCCTGCA 594 377 295 Antisense
CCAGCTCTCGAGCCAATGCAATTTT 272 273 370 Antisense
GCTTCGAAAGGCTTGAGATTCCCCA 64 305 418 Antisense
GATTCCCCACTGATTTGTACGATAC 381 433 434 Antisense
ATGTTCCAATGTTCGGACCACCATC 527 47 494 Antisense
TTCGGACCACCATCCTTGAATTTCA 109 693 505 Antisense
GTGCACGGTTTTATCACTCTCAAGC 643 479 565 Antisense
GTCGCCATCCTCAGTACTAGTAATG 417 475 610 Antisense
AGCATCACGTGCTCACATTGAATGT 162 79 668 Antisense
Sequence Source Affymetrix Proprietary Database