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[187900_at]

Description K09E4.5 /REP_DB=WormBase Gene ID /WP=CE19998 /GEN=gur-4 /TR=Q9XU57 /GB=CAB05770.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 38      6grp_total > 03      4grp_total > 49      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 105.1
(-3)
P 		139.8
(0.1)
P 		171.5
(3)
P 		140.7
(0.2)
P 		66
B 117.9
(-0.3)
P 		171.1
(3)
P 		126.9
(0.2)
P 		74.8
(-3)
A 		96
C 103.3
(-3)
P 		166.5
(3)
P 		152.5
(1.7)
P 		149
(1.3)
P 		63
avr 108.8
(-3) 		159.1
(3) 		150.3
(2) 		121.5
(-1.5) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 118.6
(2.6)
P 		116.6
(2.5)
P 		125.1
(3)
P 		99.1
(1.4)
P 		78.7
(0.2)
P 		24.9
(-3)
A 		100
B 187.4
(3)
P 		181.4
(2.7)
P 		85.6
(-1.4)
P 		136.7
(0.8)
P 		79.9
(-1.6)
P 		47.2
(-3)
P 		140
C 148.9
(1.5)
P 		182.6
(3)
P 		93.5
(-0.9)
P 		111.1
(-0.2)
P 		72.7
(-1.9)
P 		47
(-3)
M 		136
avr 151.6
(2.6) 		160.2
(3) 		101.4
(0.1) 		115.6
(0.8) 		77.1
(-1.1) 		39.7
(-3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 38.3
(1.4)
P 		30.4
(-0.6)
P 		44.8
(3)
P 		20.6
(-3)
P 		24
B 37.6
(1.9)
P 		42.3
(3)
P 		29.4
(0.1)
P 		15.9
(-3)
A 		26
C 34.2
(-1.1)
P 		47.9
(1.9)
P 		53.2
(3)
P 		25.1
(-3)
P 		28
avr 36.7
(1.4) 		40.2
(2.4) 		42.5
(3) 		20.5
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 21.9
(-0.3)
P 		41.5
(3)
P 		27.2
(0.6)
P 		25.1
(0.2)
P 		23.7
(-0)
P 		6.1
(-3)
A 		35
B 65.2
(3)
P 		60.4
(2.4)
P 		20.8
(-2.6)
P 		36.2
(-0.7)
P 		32.5
(-1.1)
P 		17.6
(-3)
P 		48
C 55.2
(2.9)
P 		55.7
(3)
P 		23.8
(-1.8)
P 		22.3
(-2)
P 		23.5
(-1.8)
P 		15.7
(-3)
M 		40
avr 47.4
(2.2) 		52.5
(3) 		23.9
(-1.4) 		27.9
(-0.7) 		26.6
(-0.9) 		13.1
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3744
Sequence Type Exemplar sequence
Representative Public ID K09E4.5 NCBI
Target Description K09E4.5 /REP_DB=WormBase Gene ID /WP=CE19998 /GEN=gur-4 /TR=Q9XU57 /GB=CAB05770.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064546(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064546 NCBI Caenorhabditis elegans GUstatory Receptor family member (gur-4) (gur-4) mRNA, complete cds. 11/11 None
GENEFINDER00000022871 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14105478:14107908:1 11/11 None
K09E4.5 ENSEMBL cdna:known chromosome:CEL140:II:14104664:14107908:1 gene:K09E4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022860 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14105474-14107905(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gur-4
Ensembl K09E4.5
Entrez Gene 191664 Entrez gene
SwissProt Q9XU57 EMBL-EBI
WormBase CE30158 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05770 Hypothetical protein K09E4.5 [Caenorhabditis elegans] ref|NP_496947.2| GUstatory Receptor family member (gur-4) [Caenorhabditis elegans] 0.0
blast CAE73402 Hypothetical protein CBG20844 [Caenorhabditis briggsae] 0.0
blast CAB05770 Hypothetical protein K09E4.5 [Caenorhabditis elegans] ref|NP_496947.2| GUstatory Receptor family member (gur-4) [Caenorhabditis elegans] 1.0E-171
blast CAE73402 Hypothetical protein CBG20844 [Caenorhabditis briggsae] 1.0E-155
blast CAE59076 Hypothetical protein CBG02364 [Caenorhabditis briggsae] 3.0E-76
blast CAE59076 Hypothetical protein CBG02364 [Caenorhabditis briggsae] 8.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496947.2 6 65-87,102-124,159-176,203-225,273-295,305-327
K09E4.5 6 65-87,102-124,159-176,203-225,273-295,305-327
GENEFINDER00000022871 4 80-97,124-146,194-216,226-248
Sequence
Target Sequence 
>C. ELEGANS:187900_AT
gaccctgttcattttgattcactatacaaatgcaactatgctggaaatgcgatatttcaa
tcgagaaatctcgaatttcaatggttcgggagatggagcatctgcaaagctcatcgagca
cttggagatctacagtaatttgtgcacagttatacggcatttggacctgatttttcggct
ctacacattcatcatgatagtcatcacgattccatcaatgatcttcacacttatgatgat
gaatcatcgaattcattcattctatgacttgattctatgcatgccaactatcggattatg
tgcattcagcttcttcgcagtcactattgctccagcgaggttgcatgatgagatatgtcg
atctaaaggatacctgtgtcaaaaccgttcaatttggttcccataccgtaaggaagtata
tttaattgcaaatacgctatcatctcacatggaacaattcgatctcggggtctcggtttg
gggattcgctttgctgtcaaggccgctgattttgggaacactctccgcgactgccatgat
gttgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCTGTTCATTTTGATTCACTAT 680 381 426 Antisense
TTTGGACCTGATTTTTCGGCTCTAC 234 667 585 Antisense
TTCGGCTCTACACATTCATCATGAT 15 695 599 Antisense
GATTCTATGCATGCCAACTATCGGA 641 431 696 Antisense
GTCACTATTGCTCCAGCGAGGTTGC 690 463 745 Antisense
GGATACCTGTGTCAAAACCGTTCAA 221 509 793 Antisense
GCAAATACGCTATCATCTCACATGG 698 317 853 Antisense
AACAATTCGATCTCGGGGTCTCGGT 674 133 878 Antisense
TTTGGGGATTCGCTTTGCTGTCAAG 372 663 902 Antisense
GCCGCTGATTTTGGGAACACTCTCC 5 287 927 Antisense
TCCGCGACTGCCATGATGTTGTCAC 77 597 949 Antisense
Sequence Source Affymetrix Proprietary Database