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[187898_at]

Description Y54E10BR.G_rc /REP_DB=WormBase Gene ID /WP=CE22469 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF59554.1
Cluster 6grp_total > 36      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 81.9
(-2.9)
A 		77.4
(-3)
A 		94.2
(-2.6)
A 		331.2
(3)
P 		254
B 89.9
(-2)
P 		103
(-1.6)
A 		59.8
(-3)
A 		240.9
(3)
P 		181
C 96.1
(-2.7)
A 		87.3
(-2.9)
A 		85.2
(-3)
A 		300.2
(3)
P 		215
avr 89.3
(-2.7) 		89.2
(-2.7) 		79.7
(-3) 		290.8
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 119.5
(3)
A 		59.2
(-2.1)
A 		74.8
(-0.8)
A 		48.9
(-3)
A 		58.3
(-2.2)
A 		69.4
(-1.3)
A 		71
B 104.9
(3)
A 		71.7
(-0.6)
A 		78.1
(0.1)
A 		65.4
(-1.3)
M 		50.2
(-3)
A 		66.1
(-1.3)
A 		55
C 22.6
(-2.8)
A 		90.6
(3)
A 		54.4
(-0.1)
A 		83.6
(2.4)
A 		19.9
(-3)
A 		83.7
(2.4)
M 		71
avr 82.3
(3) 		73.8
(1.7) 		69.1
(1) 		66
(0.5) 		42.8
(-3) 		73.1
(1.6) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 29.8
(-0.5)
A 		16.8
(-3)
A 		24.6
(-1.5)
A 		48.5
(3)
P 		32
B 28.7
(-0.6)
P 		25.4
(-1.2)
A 		13.9
(-3)
A 		51.3
(3)
P 		37
C 31.8
(-1.4)
A 		25.1
(-3)
A 		29.7
(-1.9)
A 		50.6
(3)
P 		26
avr 30.1
(-1.3) 		22.4
(-3) 		22.7
(-2.9) 		50.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 22
(3)
A 		21.1
(2.4)
A 		16.3
(-0.6)
A 		12.4
(-3)
A 		17.6
(0.3)
A 		16.9
(-0.2)
A 		10
B 36.5
(3)
A 		23.9
(-0.9)
A 		19
(-2.5)
A 		17.3
(-3)
M 		20.4
(-2)
A 		24.6
(-0.7)
A 		19
C 8.4
(-2.4)
A 		27.7
(2.9)
A 		13.8
(-0.9)
A 		16.8
(-0.1)
A 		6.4
(-3)
A 		28
(3)
M 		22
avr 22.3
(1.8) 		24.2
(3) 		16.4
(-2) 		15.5
(-2.6) 		14.8
(-3) 		23.2
(2.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28177
Sequence Type Exemplar sequence
Representative Public ID Y54E10BR.G NCBI
Target Description Y54E10BR.G_rc /REP_DB=WormBase Gene ID /WP=CE22469 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF59554.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y54E10BR.G
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y54E10BR.G Y54E10BR.G_rc /REP_DB=WormBase Gene ID /WP=CE22469 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF59554.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058689 10/11 Negative Strand Matching Probes A B 
SNAP00000038968 10/11 Negative Strand Matching Probes None
GENEFINDER00000038975 11/11 Negative Strand Matching Probes None
Y54E10BR.4 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3018719-3021423(-) 54.44 96.8
Sequence
Target Sequence 
>C. ELEGANS:187898_AT
gattgttcgaactccgagcattgcagatctagaagtgacgtcatgcacagaaaatgggcc
atccgcaagtggatccatatgaatttttgccattctcatgtgaggcattggttgatcttc
gaaaaggcgctcatttgttgcgtgttttccaccttttggattggccaatgtgtagactag
gccacgtcgatttgccattcgattccaattgatatgaagctgttgatttccatcctcgtc
gacggatacggcacacagaatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTTCGAACTCCGAGCATTGCA 195 435 76 Antisense
ATGGGCCATCCGCAAGTGGATCCAT 87 51 129 Antisense
GAATTTTTGCCATTCTCATGTGAGG 243 325 156 Antisense
CATGTGAGGCATTGGTTGATCTTCG 82 211 172 Antisense
GTTGATCTTCGAAAAGGCGCTCATT 142 439 186 Antisense
GGCGCTCATTTGTTGCGTGTTTTCC 302 543 201 Antisense
TGTTTTCCACCTTTTGGATTGGCCA 477 557 218 Antisense
GACTAGGCCACGTCGATTTGCCATT 136 369 250 Antisense
GATTTGCCATTCGATTCCAATTGAT 5 429 264 Antisense
TCCATCCTCGTCGACGGATACGGCA 381 591 304 Antisense
TCGACGGATACGGCACACAGAATTA 44 603 314 Antisense
Sequence Source Affymetrix Proprietary Database