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[187896_s_at]

Description R06C7.7 /REP_DB=WormBase Gene ID /WP=CE06250 /GEN=rls-1 /TR=Q21769 /GB=CAA95838.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 56      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 83      6grp_total > 47      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 36      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 451.4
(3)
P 		391.5
(1.2)
P 		355.6
(0.1)
P 		253.5
(-3)
P 		198
B 505
(3)
P 		391.1
(-1.8)
P 		372.5
(-2.6)
P 		362.7
(-3)
P 		142
C 450.4
(3)
P 		325.9
(-1.7)
P 		330
(-1.5)
P 		289.8
(-3)
P 		161
avr 468.9
(3) 		369.5
(-0.6) 		352.7
(-1.2) 		302
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 482.7
(1.1)
P 		577.2
(3)
P 		371.8
(-1.2)
P 		399.1
(-0.7)
P 		284.6
(-3)
P 		573.5
(2.9)
P 		293
B 417.9
(-0.7)
P 		430.2
(-0.3)
P 		467.7
(0.8)
P 		404.9
(-1.1)
P 		343.8
(-3)
P 		539.1
(3)
P 		195
C 599.5
(2.3)
P 		405.2
(-2)
P 		465.4
(-0.7)
P 		631.8
(3)
P 		360.3
(-3)
P 		566.4
(1.6)
P 		272
avr 500
(1.4) 		470.9
(0.7) 		435
(-0.3) 		478.6
(0.9) 		329.6
(-3) 		559.7
(3) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 164.4
(3)
P 		85
(-0.7)
P 		93
(-0.4)
P 		37.1
(-3)
P 		127
B 161
(3)
P 		96.6
(-1.6)
P 		86.3
(-2.4)
P 		77.3
(-3)
P 		84
C 149.1
(3)
P 		93.7
(-0.3)
P 		115
(1)
P 		48.9
(-3)
P 		100
avr 158.2
(3) 		91.8
(-0.8) 		98.1
(-0.5) 		54.4
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 89
(-2.6)
P 		205.3
(3)
P 		81
(-3)
P 		101.2
(-2)
P 		85.9
(-2.8)
P 		139.6
(-0.2)
P 		124
B 145.4
(-0.6)
P 		143.2
(-0.7)
P 		113.6
(-2.6)
P 		107.2
(-3)
P 		139.7
(-0.9)
P 		201
(3)
P 		94
C 222.2
(3)
P 		123.7
(-2.6)
P 		118.4
(-2.9)
P 		127.1
(-2.4)
P 		116.6
(-3)
P 		189.6
(1.1)
P 		106
avr 152.2
(1) 		157.4
(1.4) 		104.3
(-3) 		111.8
(-2.4) 		114.1
(-2.2) 		176.7
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187896_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2324
Sequence Type Exemplar sequence
Representative Public ID R06C7.7 NCBI
Target Description R06C7.7 /REP_DB=WormBase Gene ID /WP=CE06250 /GEN=rls-1 /TR=Q21769 /GB=CAA95838.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059649 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-61) (lin-61) mRNA, complete cds. 11/11 None
GENEFINDER00000036123 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7256974:7258947:-1 11/11 None
SNAP00000036116 ENSEMBL cdna:SNAP chromosome:CEL140:I:7257107:7258947:-1 11/11 None
R06C7.7.1 ENSEMBL cdna:known chromosome:CEL140:I:7256961:7258947:-1 gene:R06C7.7 11/11 None
R06C7.7.2 ENSEMBL cdna:known chromosome:CEL140:I:7256967:7259386:-1 gene:R06C7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7257037-7259344(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-61
Ensembl R06C7.7
Entrez Gene 172467 Entrez gene
SwissProt Q21769 EMBL-EBI
WormBase CE37542 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.2558.1.S1_AT similar to l(3)mbt-like 2 isoform a cfa
CANINE_2:CFAAFFX.2559.1.S1_S_AT similar to l(3)mbt-like 2 isoform a cfa
DROSOPHILA_2:1636691_A_AT dm
DROSGENOME1:153821_AT dm
CHICKEN:GGA.16661.1.S1_S_AT l(3)mbt-like 2 (Drosophila) gga
HU35KSUBA:R36553_AT l(3)mbt-like 2 (Drosophila) hs
HU35KSUBB:RC_T99539_AT l(3)mbt-like 2 (Drosophila) hs
HU35KSUBC:RC_AA281766_AT l(3)mbt-like 2 (Drosophila) hs
U133_X3P:HS2.265327.2.S1_3P_S_AT l(3)mbt-like 2 (Drosophila) hs
U133_X3P:HS.265327.0.A2_3P_A_AT l(3)mbt-like 2 (Drosophila) hs
HG-U133_PLUS_2:1555815_A_AT l(3)mbt-like 2 (Drosophila) hs
HG-U133_PLUS_2:223205_S_AT l(3)mbt-like 2 (Drosophila) hs
HG-U133B:223205_S_AT l(3)mbt-like 2 (Drosophila) hs
HG-U95C:64452_AT l(3)mbt-like 2 (Drosophila) hs
HG-U95E:72100_AT l(3)mbt-like 2 (Drosophila) hs
MG-U74BV2:112492_AT l(3)mbt-like 2 (Drosophila) mm
MOE430B:1433777_AT l(3)mbt-like 2 (Drosophila) mm
MOUSE430_2:1433777_AT l(3)mbt-like 2 (Drosophila) mm
MU19KSUBA:TC16246_AT L(3)mbt-like 2 (Drosophila) (L3mbtl2), mRNA mm
MU19KSUBA:TC16246_G_AT L(3)mbt-like 2 (Drosophila) (L3mbtl2), mRNA mm
MU19KSUBB:TC28348_AT L(3)mbt-like 2 (Drosophila) (L3mbtl2), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA95838 Hypothetical protein R06C7.7 [Caenorhabditis elegans] ref|NP_492050.3| abnormal cell LINeage family member (lin-61) [Caenorhabditis elegans] 0.0
blast CAE68058 Hypothetical protein CBG13678 [Caenorhabditis briggsae] 1.0E-170
blast CAE74231 Hypothetical protein CBG21916 [Caenorhabditis briggsae] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR004092 EMBL-EBI Mbt repeat 4.0E-27
Pfam IPR004092 EMBL-EBI Mbt repeat 7.1E-33
Pfam IPR004092 EMBL-EBI Mbt repeat 4.0E-27
Pfam IPR004092 EMBL-EBI Mbt repeat 1.5E-33
Pfam IPR004092 EMBL-EBI Mbt repeat 1.5E-33
Sequence
Target Sequence 
>C. ELEGANS:187896_S_AT
acaaaagtttgagctcatcgaccccttggctcagcaattcaataacctccacgtcgcttc
gattctcaaattttgcaaaactgaaggatatcttattgtgggaatggatggtccagatgc
acttgaagacagttttcctattcatatcaataatacatttatgttcccagttggttatgc
ggaaaagtataatttggaacttgttccgccagatgagttcaaaggaacattcagatggga
tgaatacttggagaaagaatctgcagaaaccctaccgcttgacttgttcaagccaatgcc
ttcccaagagagattagacaaatttaaggtaattctgatttccaaacgggtaggactacg
ccttgaagctgctgacatgtgtgaaaatcagtttatttgtccagctacagtgaaatcagt
tcatggaagactgataaatgtcaatttcgacggctgggatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAAGTTTGAGCTCATCGACCCC 384 111 1305 Antisense
AGCAATTCAATAACCTCCACGTCGC 38 77 1337 Antisense
CCACGTCGCTTCGATTCTCAAATTT 235 275 1353 Antisense
TGGATGGTCCAGATGCACTTGAAGA 331 537 1409 Antisense
AAGACAGTTTTCCTATTCATATCAA 519 153 1430 Antisense
TGGAACTTGTTCCGCCAGATGAGTT 509 545 1499 Antisense
AAAGAATCTGCAGAAACCCTACCGC 567 69 1558 Antisense
TGACTTGTTCAAGCCAATGCCTTCC 613 569 1584 Antisense
GTAGGACTACGCCTTGAAGCTGCTG 317 455 1654 Antisense
ATCAGTTTATTTGTCCAGCTACAGT 661 27 1691 Antisense
ATGTCAATTTCGACGGCTGGGATGA 86 47 1742 Antisense
Sequence Source Affymetrix Proprietary Database