[Home] | [Total List]

[187895_at]

Description Y18D10A.14 /REP_DB=WormBase Gene ID /WP=CE21410 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XW09 protein_id:CAA22325.1
Cluster 6grp_total > 17      4grp_total > 45      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 175.5
(3)
P 		113.1
(0.5)
P 		70.1
(-1.2)
A 		23.3
(-3)
A 		152
B 177.1
(3)
P 		118.1
(-0.8)
P 		115.1
(-1)
A 		84.5
(-3)
A 		93
C 143.8
(1.8)
P 		158.9
(3)
P 		84.6
(-2.8)
P 		81.4
(-3)
A 		78
avr 165.5
(3) 		130
(0.9) 		89.9
(-1.4) 		63.1
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 103.8
(3)
M 		92.5
(1.7)
A 		67.2
(-1.3)
A 		52.8
(-3)
A 		78.2
(-0)
A 		94.1
(1.9)
P 		51
B 146.8
(3)
P 		105.1
(0.7)
P 		84.1
(-0.5)
P 		39.8
(-3)
A 		67.8
(-1.4)
P 		45.5
(-2.7)
P 		107
C 233.4
(3)
P 		91.5
(-1.2)
P 		109.7
(-0.6)
M 		29.9
(-3)
A 		68
(-1.9)
P 		44.7
(-2.6)
A 		204
avr 161.3
(3) 		96.4
(-0.2) 		87
(-0.7) 		40.8
(-3) 		71.3
(-1.5) 		61.4
(-2) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 63.9
(3)
P 		24.5
(-0.9)
P 		18.3
(-1.5)
A 		3.4
(-3)
A 		61
B 56.5
(3)
P 		29.2
(-1.3)
P 		26.7
(-1.6)
A 		18
(-3)
A 		39
C 47.6
(3)
P 		45.7
(2.7)
P 		29.5
(-0.2)
P 		13.7
(-3)
A 		34
avr 56
(3) 		33.1
(-0.1) 		24.8
(-1.2) 		11.7
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 19.1
(-1.2)
M 		32.9
(3)
A 		14.6
(-2.6)
A 		13.4
(-3)
A 		23.6
(0.1)
A 		22.9
(-0.1)
P 		20
B 51.1
(3)
P 		35
(0.6)
P 		20.4
(-1.5)
P 		10.5
(-3)
A 		27.5
(-0.5)
P 		17
(-2)
P 		41
C 86.5
(3)
P 		27.9
(-1.4)
P 		27.9
(-1.4)
M 		6
(-3)
A 		22
(-1.8)
P 		15
(-2.3)
A 		81
avr 52.2
(3) 		31.9
(0.1) 		21
(-1.4) 		10
(-3) 		24.4
(-1) 		18.3
(-1.8) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2005
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.14 NCBI
Target Description Y18D10A.14 /REP_DB=WormBase Gene ID /WP=CE21410 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XW09 protein_id:CAA22325.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060851(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060851 NCBI Caenorhabditis elegans PAtterning Defective family member (pad-1) (pad-1) mRNA, complete cds. 10/11 A 
GENEFINDER00000000443 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12886773:12910463:1 11/11 None
SNAP00000000423 ENSEMBL cdna:SNAP chromosome:CEL140:I:12895345:12910463:1 10/11 None
Y18D10A.13 ENSEMBL cdna:known chromosome:CEL140:I:12886716:12910902:1 gene:Y18D10A.13 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12902154-12902790(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pad-1
Ensembl Y18D10A.13
Entrez Gene 173156 Entrez gene
SwissProt Q9XW10 EMBL-EBI
WormBase CE27468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22324 Hypothetical protein Y18D10A.13 [Caenorhabditis elegans] ref|NP_493252.3| PAtterning Defective family member (pad-1) [Caenorhabditis elegans] 0.0
blast CAB59919 hypothetical protein [Caenorhabditis elegans] 0.0
blast CAE63510 Hypothetical protein CBG07989 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007249 EMBL-EBI Dopey, N-terminal 1.0E-126
Pfam IPR007249 EMBL-EBI Dopey, N-terminal 1.0E-126
Pfam IPR007249 EMBL-EBI Dopey, N-terminal 7.8E-51
Sequence
Target Sequence 
>C. ELEGANS:187895_AT
atcgatctcatctcatcagtcaactcaacactccgtgaagcgtcattcaaggcgaataaa
gtcggaatcactacaatcgacaaagcgaattttccaaccgaagagcccctactggaactt
gttcattcatgtgtttcagctgtacttcagacacagctccgtttgtgttggagctcactt
ttatccctattctcagaagctccactttcagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGATCTCATCTCATCAGTCAACT 22 37 259 Antisense
CAGTCAACTCAACACTCCGTGAAGC 381 207 275 Antisense
CACTCCGTGAAGCGTCATTCAAGGC 487 197 287 Antisense
GGAATCACTACAATCGACAAAGCGA 576 527 322 Antisense
GACAAAGCGAATTTTCCAACCGAAG 215 365 337 Antisense
AGCCCCTACTGGAACTTGTTCATTC 460 83 362 Antisense
TCATGTGTTTCAGCTGTACTTCAGA 322 621 385 Antisense
TACTTCAGACACAGCTCCGTTTGTG 375 645 401 Antisense
GTGTTGGAGCTCACTTTTATCCCTA 141 485 423 Antisense
TTATCCCTATTCTCAGAAGCTCCAC 281 681 439 Antisense
ATTCTCAGAAGCTCCACTTTCAGCG 651 9 447 Antisense
Sequence Source Affymetrix Proprietary Database