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[187891_at]

Description Y71H10B.1 /REP_DB=WormBase Gene ID /WP=CE20355 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q9TZC8 protein_id:AAC68740.1
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 10      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 75      6grp_total > 03      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 1140.4
(-3)
P 		1272.5
(0.8)
P 		1350.4
(3)
P 		1167.9
(-2.2)
P 		210
B 1111.1
(-2.1)
P 		1333.9
(3)
P 		1291.8
(2)
P 		1074.1
(-3)
P 		260
C 1154
(0.2)
P 		1280.8
(2.3)
P 		1323.4
(3)
P 		962.8
(-3)
P 		361
avr 1135.2
(-1.4) 		1295.7
(2.4) 		1321.9
(3) 		1068.3
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 901.4
(-0.1)
P 		1067.8
(3)
P 		748.8
(-3)
P 		936.7
(0.5)
P 		926.9
(0.3)
P 		812.2
(-1.8)
P 		319
B 914
(0.8)
P 		927.1
(1.1)
P 		921.4
(1)
P 		1023
(3)
P 		935.3
(1.2)
P 		724.8
(-3)
P 		298
C 1054.2
(3)
P 		871.8
(-0.2)
P 		1046.2
(2.9)
P 		1036.8
(2.7)
P 		811.3
(-1.3)
P 		714.4
(-3)
P 		340
avr 956.5
(2) 		955.6
(2) 		905.5
(0.7) 		998.8
(3) 		891.2
(0.4) 		750.5
(-3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 415.2
(3)
P 		276.2
(-0.4)
P 		353
(1.5)
P 		171
(-3)
P 		244
B 354.3
(3)
P 		329.4
(1.8)
P 		299.4
(0.4)
P 		228.9
(-3)
P 		125
C 382
(1.4)
P 		368.2
(1.1)
P 		461.2
(3)
P 		162.3
(-3)
P 		299
avr 383.8
(3) 		324.6
(1.2) 		371.2
(2.6) 		187.4
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 166.2
(-2.9)
P 		379.8
(3)
P 		163.1
(-3)
P 		237.6
(-0.9)
P 		279.7
(0.2)
P 		197.7
(-2)
P 		217
B 318
(0.6)
P 		308.6
(0.3)
P 		223.7
(-3)
P 		270.9
(-1.2)
P 		380
(3)
P 		270.3
(-1.2)
P 		156
C 390.8
(3)
P 		266
(-1.1)
P 		266.3
(-1.1)
P 		208.5
(-3)
P 		262.5
(-1.2)
P 		239.2
(-2)
P 		182
avr 291.7
(1.4) 		318.1
(3) 		217.7
(-3) 		239
(-1.7) 		307.4
(2.4) 		235.7
(-1.9) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18484
Sequence Type Exemplar sequence
Representative Public ID Y71H10B.1 NCBI
Target Description Y71H10B.1 /REP_DB=WormBase Gene ID /WP=CE20355 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q9TZC8 protein_id:AAC68740.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076090(11), NM_076091(11), NM_001029795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076090 NCBI Caenorhabditis elegans Y71H10B.1b (Y71H10B.1) mRNA, complete cds. 11/11 None
NM_076091 NCBI Caenorhabditis elegans Y71H10B.1a (Y71H10B.1) mRNA, complete cds. 11/11 None
NM_001029795 NCBI Caenorhabditis elegans Y71H10B.1c (Y71H10B.1) mRNA, complete cds. 11/11 None
GENEFINDER00000031454 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2834607:2840275:-1 11/11 None
Y71H10B.1b ENSEMBL cdna:known chromosome:CEL140:X:2834217:2840285:-1 gene:Y71H10B.1 11/11 A 
Y71H10B.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:2834607:2838646:-1 gene:Y71H10B.1 11/11 None
Y71H10B.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:2834607:2840285:-1 gene:Y71H10B.1 11/11 None
Y71H10B.1c ENSEMBL cdna:known chromosome:CEL140:X:2834607:2838110:-1 gene:Y71H10B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031453 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2834606-2837928(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y71H10B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68587 Hypothetical protein Y71H10B.1b [Caenorhabditis elegans] ref|NP_508491.1| Y71H10B.1b [Caenorhabditis elegans] 0.0
blast AAC68740 Hypothetical protein Y71H10B.1a [Caenorhabditis elegans] ref|NP_508492.1| Y71H10B.1a [Caenorhabditis elegans] 0.0
blast CAE58827 Hypothetical protein CBG02038 [Caenorhabditis briggsae] 0.0
blast AAO91691 Hypothetical protein Y71H10B.1c [Caenorhabditis elegans] ref|NP_001024966.1| Y71H10B.1c [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec 5NTC_HUMAN (P49902) Cytosolic purine 5-nucleotidase (EC 3.1.3.5) (5-nucleotidase cytosolic II) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008380 EMBL-EBI Purine 5-nucleotidase 1.0E-126
Pfam IPR008380 EMBL-EBI Purine 5-nucleotidase 1.0E-126
Pfam IPR008380 EMBL-EBI Purine 5-nucleotidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187891_AT
ggagagcacgttggctgacatctataagaatttggatggagcttctcgtcataagcctgt
cgtcaaggacatcgttgataagattagaaaacttaccaatcaaatggacgaggagtatgg
atgtttgggaagtctttttagaaccggaggccgaactaccttctttgcctctcaagtcga
aagatatgctgacgtctacgcttcttcttgctacaaccttgtacactatccatcattcta
ctatttccgtgcaccaatgaaatgcatgccacatgagcttacagtcgaccacgcacacac
tttgagatctcgatcaaacactctggaacgccaacaaagtgtcggacagcaagttcgtgg
atggaacaagaaaacgttgaacgatcaggaaacgttctgccacgaggaggaagaggacga
agatcaaactaacagcagcagcagcgatggagaggcaacgaagcgtgaacgtaccaagtc
aggtagcgacgcttcttcgaacgctggagacatttcaaccgagccaccacaccaggatgt
tgtcactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAGCACGTTGGCTGACATCTAT 311 519 1014 Antisense
TTCTCGTCATAAGCCTGTCGTCAAG 518 689 1056 Antisense
CCTTCTTTGCCTCTCAAGTCGAAAG 665 267 1172 Antisense
AGATATGCTGACGTCTACGCTTCTT 702 65 1195 Antisense
AACCTTGTACACTATCCATCATTCT 384 147 1228 Antisense
TGCCACATGAGCTTACAGTCGACCA 437 587 1280 Antisense
CACGCACACACTTTGAGATCTCGAT 117 201 1303 Antisense
CTCGATCAAACACTCTGGAACGCCA 339 233 1322 Antisense
GTCAGGTAGCGACGCTTCTTCGAAC 243 467 1491 Antisense
GCTGGAGACATTTCAACCGAGCCAC 122 295 1516 Antisense
CCACCACACCAGGATGTTGTCACTC 597 273 1537 Antisense
Sequence Source Affymetrix Proprietary Database