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[187888_s_at]

Description Y5H2A.A_rc /REP_DB=WormBase Gene ID /WP=CE21311 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF59624.1
Cluster 6grp_total > 77      4grp_total > 50      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 3.7
(-2.8)
A 		38.3
(3)
A 		7
(-2.2)
A 		2.2
(-3)
A 		36
B 7.2
(-2.2)
A 		6.5
(-2.3)
A 		44.7
(3)
A 		1.8
(-3)
A 		43
C 6.4
(-2.3)
A 		43.6
(3)
A 		10.6
(-1.7)
A 		1.6
(-3)
A 		42
avr 5.8
(-2.2) 		29.5
(3) 		20.8
(1.1) 		1.9
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 5.4
(-2.7)
A 		6.5
(-2.6)
A 		3.6
(-3)
A 		4
(-2.9)
A 		17.8
(-1)
A 		45.5
(3)
A 		42
B 8.3
(-1.8)
A 		20.4
(1.8)
A 		7.9
(-2)
A 		6.3
(-2.4)
A 		4.4
(-3)
A 		24.6
(3)
A 		20
C 3.4
(-3)
A 		26.3
(2.3)
A 		10.9
(-1.3)
A 		27.6
(2.6)
A 		29.3
(3)
A 		7.8
(-2)
A 		26
avr 5.7
(-3) 		17.7
(0.5) 		7.5
(-2.5) 		12.6
(-1) 		17.2
(0.4) 		26
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.4
(-2.2)
A 		8.3
(3)
A 		1.8
(-1.9)
A 		0.3
(-3)
A 		8
B 2.3
(-1.9)
A 		1.6
(-2.3)
A 		10.4
(3)
A 		0.4
(-3)
A 		10
C 2.1
(-2.1)
A 		12.5
(3)
A 		3.7
(-1.3)
A 		0.3
(-3)
A 		12
avr 1.9
(-1.7) 		7.5
(3) 		5.3
(1.2) 		0.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1
(-2.9)
A 		2.3
(-2.1)
A 		0.8
(-3)
A 		1
(-2.9)
A 		5.4
(-0.3)
A 		11.1
(3)
A 		10
B 2.9
(-2)
A 		6.8
(1.1)
A 		1.9
(-2.8)
A 		1.7
(-3)
A 		1.8
(-2.9)
A 		9.2
(3)
A 		8
C 1.3
(-3)
A 		8
(1.9)
A 		2.8
(-1.9)
A 		5.6
(0.1)
A 		9.5
(3)
A 		2.6
(-2)
A 		8
avr 1.7
(-3) 		5.7
(1.1) 		1.8
(-2.9) 		2.8
(-1.9) 		5.6
(1) 		7.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187888_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28201
Sequence Type Exemplar sequence
Representative Public ID Y5H2A.A NCBI
Target Description Y5H2A.A_rc /REP_DB=WormBase Gene ID /WP=CE21311 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF59624.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182410 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-4) (abu-4) mRNA, complete cds. 11/11 A 
SNAP00000022368 ENSEMBL cdna:SNAP chromosome:CEL140:V:2274532:2275791:1 11/11 None
GENEFINDER00000022372 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2274710:2275805:1 11/11 None
Y5H2A.3 ENSEMBL cdna:known chromosome:CEL140:V:2274710:2275805:1 gene:Y5H2A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2272268-2275065(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol abu-4
Ensembl Y5H2A.3
Entrez Gene 353458 Entrez gene
SwissProt Q86S74 EMBL-EBI
WormBase CE21313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_872210 Activated in Blocked Unfolded protein response family member (abu-4) [Caenorhabditis elegans] gb|AAO25980.1| Activated in blocked unfolded protein response protein 4 [Caenorhabditis elegans] 3.0E-43
blast CAB54985 Hypothetical protein Y105C5A.6 [Caenorhabditis elegans] emb|CAB54982.1| Hypothetical protein Y105C5A.3 [Caenorhabditis elegans] ref|NP_502875.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-79) [Caenorhabditis elegans] ref|NP_502872.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-76) [Caenorhabditis elegans] 2.0E-35
blast CAB54984 Hypothetical protein Y105C5A.5 [Caenorhabditis elegans] ref|NP_502874.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-78) [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 3.1E-33
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 3.1E-33
Sequence
Target Sequence 
>C. ELEGANS:187888_S_AT
cttcttgcttctagctttctacttattgaggtacgtattctttttccaggcaacggcaac
atcaactcgcgaaaaacgtcaatcgtgtggctgtgctccgcgagttcaaccaagctgctc
atgccaacaaaccacttatgctcaaccaccacaatacagttgctcctgtcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTGCTTCTAGCTTTCTACTTA 528 221 1868 Antisense
CTTGCTTCTAGCTTTCTACTTATTG 115 219 1871 Antisense
GCTTCTAGCTTTCTACTTATTGAGG 335 305 1874 Antisense
CAACGGCAACATCAACTCGCGAAAA 592 183 1918 Antisense
GCAACATCAACTCGCGAAAAACGTC 199 319 1923 Antisense
TCATGCCAACAAACCACTTATGCTC 707 621 1986 Antisense
GCCAACAAACCACTTATGCTCAACC 678 275 1990 Antisense
CAACAAACCACTTATGCTCAACCAC 684 189 1992 Antisense
TATGCTCAACCACCACAATACAGTT 532 657 2004 Antisense
AACCACCACAATACAGTTGCTCCTG 701 147 2011 Antisense
CACAATACAGTTGCTCCTGTCAGAA 127 195 2017 Antisense
Sequence Source Affymetrix Proprietary Database