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[187884_at]

Description Y67D8C.J_rc /REP_DB=WormBase Gene ID /WP=CE26234 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23378.1
Cluster 6grp_total > 45      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 19.7
(-2.3)
A 		3.2
(-3)
A 		14.4
(-2.5)
A 		138.3
(3)
P 		135
B 45
(1.7)
A 		8.1
(-2.7)
A 		5.7
(-3)
A 		55.7
(3)
A 		50
C 2.9
(-3)
A 		7.1
(-2.9)
A 		8.2
(-2.8)
A 		181.2
(3)
P 		178
avr 22.5
(-2.2) 		6.1
(-3) 		9.4
(-2.8) 		125.1
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 3.6
(-2.9)
A 		2.6
(-3)
A 		23.9
(0.2)
A 		11.5
(-1.7)
A 		5.6
(-2.6)
A 		43.1
(3)
A 		41
B 24.1
(2.9)
A 		24.5
(3)
A 		16.1
(0.7)
A 		2.5
(-3)
A 		4.7
(-2.4)
A 		6.3
(-2)
A 		22
C 30.4
(1.4)
A 		40.4
(3)
A 		17.6
(-0.7)
A 		3.1
(-3)
A 		12.1
(-1.6)
A 		5.2
(-2.7)
A 		37
avr 19.4
(1.9) 		22.5
(3) 		19.2
(1.8) 		5.7
(-3) 		7.5
(-2.4) 		18.2
(1.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 7.2
(-1)
A 		0.7
(-3)
A 		3.8
(-2)
A 		20.2
(3)
P 		20
B 14.3
(3)
A 		2
(-2.7)
A 		1.3
(-3)
A 		11.9
(1.9)
A 		13
C 1
(-3)
A 		2
(-2.8)
A 		2.9
(-2.6)
A 		30.6
(3)
P 		30
avr 7.5
(-1.2) 		1.6
(-3) 		2.7
(-2.7) 		20.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.9
(-2.9)
A 		5.2
(-0.2)
A 		2.9
(-1.7)
A 		1.7
(-2.4)
A 		10.5
(3)
A 		10
B 8.4
(3)
A 		8.2
(2.8)
A 		3.9
(-0.5)
A 		0.7
(-3)
A 		1.9
(-2.1)
A 		2.3
(-1.8)
A 		8
C 11.3
(2.5)
A 		12.3
(3)
A 		4.5
(-1)
A 		0.6
(-3)
A 		3.9
(-1.3)
A 		1.7
(-2.4)
A 		12
avr 6.8
(2.7) 		7.1
(3) 		4.5
(0.3) 		1.4
(-3) 		2.5
(-1.8) 		4.8
(0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28197
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.J NCBI
Target Description Y67D8C.J_rc /REP_DB=WormBase Gene ID /WP=CE26234 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23378.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001609 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3051991:3054124:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067884 11/11 Negative Strand Matching Probes A 
Y67D8C.4 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3050417-3055664(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94185 Hypothetical protein T22B11.5 [Caenorhabditis elegans] ref|NP_500617.1| T22B11.5 [Caenorhabditis elegans] 7.0E-13
blast CAE58572 Hypothetical protein CBG01737 [Caenorhabditis briggsae] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:187884_AT
cctgcccagttctttgtgatgagatgttgagctcattcctcgatcgaaatccggagctga
cgtatcttctgaatccgcagctgaagattcgtgaagagcttttcgtttttttctctttga
aaggttattaatggcacttttaattttctttgacaaagccatctttttcgactttttcca
ttcgatcgtgtcgatcttagctttcttggatgttccaaagtgacaattgtactctatatt
cctcgtaattaagctgaaaagcggggtttgccatttctcctcaaaataggagatccaaat
ttttttattttcaaacacccgccaattggtctcgcgacaccccgcgattttatgaggccc
cacgaaaaggggagcagaacgaaaaggggatgttgcgtgagaaaaattgcgtcttgtgcg
tttggcacagtgccagatccccttttcgttgctccccttttcgtaactccccttttcgta
tctccccttttcgcagatcccctttttgcagatccccttttcgttctgctccccttttcg
tggggcctcgattttattgacacacgcgaaacgagtgtgaccgtagtcggcgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGCCCAGTTCTTTGTGATGAGAT 38 267 355 Antisense
GAGATGTTGAGCTCATTCCTCGATC 218 397 375 Antisense
GAAATCCGGAGCTGACGTATCTTCT 186 363 400 Antisense
ACGTATCTTCTGAATCCGCAGCTGA 232 95 414 Antisense
GACTTTTTCCATTCGATCGTGTCGA 83 373 524 Antisense
TCGTGTCGATCTTAGCTTTCTTGGA 575 605 540 Antisense
GACAATTGTACTCTATATTCCTCGT 95 365 576 Antisense
TTTTCAAACACCCGCCAATTGGTCT 89 669 662 Antisense
AAATTGCGTCTTGTGCGTTTGGCAC 487 115 758 Antisense
TGGGGCCTCGATTTTATTGACACAC 290 553 895 Antisense
ACGAGTGTGACCGTAGTCGGCGTGC 385 93 925 Antisense
Sequence Source Affymetrix Proprietary Database