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[187882_s_at]

Description Y67D8C.L_rc /REP_DB=WormBase Gene ID /WP=CE22775 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23380.1
Cluster 6grp_total > 95      4grp_total > 06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 8.7
(-3)
A 		31.2
(-0.2)
A 		30.7
(-0.3)
A 		56.8
(3)
P 		48
B 24.5
(0.5)
A 		13.6
(-1.4)
A 		39.6
(3)
A 		3.8
(-3)
A 		36
C 52.5
(3)
A 		22.9
(-1.3)
A 		11.5
(-3)
A 		48.9
(2.5)
A 		41
avr 28.6
(-0.4) 		22.6
(-3) 		27.3
(-1) 		36.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 30.9
(-0.8)
A 		22.9
(-1.7)
A 		10.7
(-3)
A 		38.6
(0.1)
A 		31.3
(-0.7)
A 		65.1
(3)
P 		54
B 14.5
(-1.4)
A 		16
(-1.2)
A 		6
(-3)
A 		16.8
(-1)
A 		38.5
(3)
A 		25.6
(0.6)
A 		33
C 21.2
(-1.6)
A 		36.8
(1)
A 		16.8
(-2.4)
A 		42.4
(2)
A 		48.6
(3)
P 		13
(-3)
A 		36
avr 22.2
(-0.7) 		25.2
(-0) 		11.2
(-3) 		32.6
(1.5) 		39.5
(3) 		34.6
(2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.2
(-3)
A 		6.8
(1.2)
A 		8
(2.6)
A 		8.3
(3)
P 		5
B 7.8
(2)
A 		3.4
(-1.1)
A 		9.2
(3)
A 		0.8
(-3)
A 		8
C 17.4
(3)
A 		6.6
(-1.8)
A 		4
(-3)
A 		8.2
(-1.1)
A 		13
avr 9.5
(3) 		5.6
(-3) 		7.1
(-0.7) 		5.8
(-2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.7
(-1.5)
A 		8.2
(-0.4)
A 		2.3
(-3)
A 		9.8
(0.3)
A 		9.4
(0.1)
A 		15.9
(3)
P 		14
B 5.1
(-1.4)
A 		5.3
(-1.4)
A 		1.4
(-3)
A 		4.4
(-1.7)
A 		15.6
(3)
A 		9.6
(0.5)
A 		14
C 7.9
(-1.1)
A 		11.2
(0.6)
A 		4.3
(-3)
A 		8.5
(-0.8)
A 		15.7
(3)
P 		4.3
(-3)
A 		11
avr 6.2
(-1.1) 		8.2
(0) 		2.7
(-3) 		7.6
(-0.3) 		13.6
(3) 		9.9
(1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187882_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28195
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.L NCBI
Target Description Y67D8C.L_rc /REP_DB=WormBase Gene ID /WP=CE22775 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23380.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067886 NCBI Caenorhabditis elegans Y67D8C.6 (Y67D8C.6) mRNA, complete cds. 11/11 A 
SNAP00000001611 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3055104:3065237:-1 11/11 None
GENEFINDER00000001626 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3062520:3065375:-1 11/11 None
Y67D8C.6 ENSEMBL cdna:known chromosome:CEL140:IV:3062520:3063362:-1 gene:Y67D8C.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3062963-3063323(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.6
Entrez Gene 190520 Entrez gene
SwissProt Q9GUN7 EMBL-EBI
WormBase CE22778 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23374 Hypothetical protein Y67D8C.6 [Caenorhabditis elegans] ref|NP_500287.1| Y67D8C.6 [Caenorhabditis elegans] 1.0E-124
blast AAG23374 Hypothetical protein Y67D8C.6 [Caenorhabditis elegans] ref|NP_500287.1| Y67D8C.6 [Caenorhabditis elegans] 8.0E-90
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 2.0E-31
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 2.0E-30
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 1.0E-29
blast AAF60628 Hypothetical protein Y46H3C.6 [Caenorhabditis elegans] ref|NP_503485.2| Y46H3C.6 [Caenorhabditis elegans] 5.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500287.1 1 241-263
Y67D8C.6 1 241-263
GENEFINDER00000001626 1 353-375
Sequence
Target Sequence 
>C. ELEGANS:187882_S_AT
gcggctccatattcctggaagacgatgaagaagttgaggtgatggcgcgcgttgacgagg
aggatgtgatggtggtgatggcgcccgatgctgtcgaagaactcgatgatccggtgccag
agtcgacgagtgaggaagctgctgggccgtcggcgagcatgtcgttgaagcgatccgccg
aggatcttccagacggcgagcccagcaccaagcgacccatctcctcgacgatggaaggtt
ccgatcgccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGCTCCATATTCCTGGAAGACGA 145 295 74 Antisense
AAGAAGTTGAGGTGATGGCGCGCGT 534 151 101 Antisense
GATGGCGCGCGTTGACGAGGAGGAT 43 407 114 Antisense
CGCCCGATGCTGTCGAAGAACTCGA 112 257 155 Antisense
CGAAGAACTCGATGATCCGGTGCCA 612 253 168 Antisense
CCGGTGCCAGAGTCGACGAGTGAGG 639 265 184 Antisense
ACGAGTGAGGAAGCTGCTGGGCCGT 328 91 199 Antisense
GAGCATGTCGTTGAAGCGATCCGCC 96 389 228 Antisense
ATCCGCCGAGGATCTTCCAGACGGC 125 39 246 Antisense
GACCCATCTCCTCGACGATGGAAGG 131 381 287 Antisense
ACGATGGAAGGTTCCGATCGCCGCT 3 95 301 Antisense
Sequence Source Affymetrix Proprietary Database