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[187880_s_at]

Description Y48G9A.H_rc /REP_DB=WormBase Gene ID /WP=CE25327 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60714.1
Cluster 6grp_total > 53      4grp_total > 52      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 72.5
(1.1)
A 		99.1
(3)
A 		14.8
(-3)
A 		30.4
(-1.9)
A 		84
B 29.7
(-2.8)
A 		75.6
(3)
A 		55.4
(0.4)
A 		28.2
(-3)
A 		47
C 62.3
(3)
A 		13.3
(-3)
A 		56.3
(2.3)
A 		16.5
(-2.6)
A 		49
avr 54.8
(1.7) 		62.7
(3) 		42.2
(-0.3) 		25
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 40.8
(0)
A 		41.1
(0.1)
A 		71.9
(3)
A 		15.5
(-2.4)
A 		12.5
(-2.6)
A 		8.8
(-3)
A 		63
B 23.6
(-1.4)
A 		9.3
(-3)
A 		15.1
(-2.4)
A 		38.2
(0.2)
A 		63.8
(3)
A 		41.4
(0.5)
A 		55
C 55.9
(0.4)
A 		25.8
(-2.7)
A 		66.7
(1.5)
A 		22.6
(-3)
A 		80.8
(3)
A 		33.6
(-1.9)
A 		58
avr 40.1
(0.3) 		25.4
(-3) 		51.2
(2.7) 		25.4
(-3) 		52.4
(3) 		27.9
(-2.4) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26.4
(3)
A 		21.5
(1.7)
A 		3.9
(-3)
A 		4.4
(-2.9)
A 		23
B 9.5
(-1.3)
A 		18.7
(3)
A 		12.8
(0.2)
A 		6
(-3)
A 		13
C 20.6
(3)
A 		3.8
(-2.7)
A 		19.6
(2.7)
A 		2.8
(-3)
A 		18
avr 18.8
(3) 		14.7
(1.3) 		12.1
(0.2) 		4.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 7.5
(-0.6)
A 		14.6
(2.5)
A 		15.7
(3)
A 		3.9
(-2.2)
A 		3.8
(-2.3)
A 		2.1
(-3)
A 		14
B 8.2
(-1.7)
A 		3.1
(-3)
A 		3.7
(-2.8)
A 		10.1
(-1.2)
A 		25.9
(3)
A 		15.4
(0.2)
A 		23
C 20.7
(1.5)
A 		7.9
(-2.1)
A 		17
(0.5)
A 		4.5
(-3)
A 		26.1
(3)
A 		11.3
(-1.1)
A 		22
avr 12.1
(-0.1) 		8.5
(-1.9) 		12.1
(-0.1) 		6.2
(-3) 		18.6
(3) 		9.6
(-1.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187880_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28187
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.H NCBI
Target Description Y48G9A.H_rc /REP_DB=WormBase Gene ID /WP=CE25327 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60714.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48G9A.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G9A.H Y48G9A.H_rc /REP_DB=WormBase Gene ID /WP=CE25327 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60714.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065099 10/11 Negative Strand Matching Probes A 
Y48G9A.8.2 10/11 Negative Strand Matching Probes None
Y48G9A.8.1 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2104409-2107153(-) 80.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:187880_S_AT
tcttcactgttttgttctacgggacgattggcggcttcttgggcggcacgttcgcagtcg
tggataccaactagcagcgaataatccatcaaatgcattctcgtgagccattccgtatca
ctagtgagcatctcaatgagcagttttccggcctctggcggcaggttaagcttccagttt
tgttccagaaaatcgttatctttcagtgttgggagatctttggctttttccttatccgac
gccgcacgggatactgtagatcctttaaggtcgaattttgtatggacaccgtactttcgg
ccgaacacgttgcgcattacgatcaggtatgtctctgagccctcgattgttagtctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCACTGTTTTGTTCTACGGGAC 216 615 326 Antisense
ACGTTCGCAGTCGTGGATACCAACT 165 93 373 Antisense
TGAGCCATTCCGTATCACTAGTGAG 380 569 429 Antisense
ATCTCAATGAGCAGTTTTCCGGCCT 634 29 455 Antisense
GGTTAAGCTTCCAGTTTTGTTCCAG 237 289 489 Antisense
GGGAGATCTTTGGCTTTTTCCTTAT 39 495 536 Antisense
CCGACGCCGCACGGGATACTGTAGA 683 263 561 Antisense
TATGGACACCGTACTTTCGGCCGAA 690 653 606 Antisense
GCCGAACACGTTGCGCATTACGATC 661 281 625 Antisense
CGATCAGGTATGTCTCTGAGCCCTC 528 247 645 Antisense
CTGAGCCCTCGATTGTTAGTCTGAA 199 239 660 Antisense
Sequence Source Affymetrix Proprietary Database