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[187878_at]

Description Y48G9A.B_rc /REP_DB=WormBase Gene ID /WP=CE25323 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60708.1
Cluster 6grp_total > 90      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 4.6
(-3)
A 		29.9
(3)
A 		6.6
(-2.5)
A 		28.3
(2.6)
A 		25
B 5.6
(-0.5)
A 		10.2
(3)
A 		8.9
(2)
A 		2.4
(-3)
A 		8
C 14.8
(-0.6)
A 		33.3
(3)
A 		2.8
(-3)
A 		30.1
(2.4)
A 		31
avr 8.3
(-2.3) 		24.5
(3) 		6.1
(-3) 		20.3
(1.6) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.5
(-2)
A 		2.9
(-3)
A 		3.8
(-2.6)
A 		17.8
(3)
A 		4.5
(-2.4)
A 		4.1
(-2.5)
A 		15
B 19.7
(3)
A 		4.5
(-2.4)
A 		5.9
(-1.9)
A 		16.5
(1.9)
A 		14.5
(1.1)
A 		2.9
(-3)
A 		17
C 4.2
(-1.8)
A 		16.1
(3)
A 		2.9
(-2.3)
A 		10.7
(0.8)
A 		3.8
(-2)
A 		1.2
(-3)
A 		15
avr 9.8
(0.5) 		7.8
(-0.5) 		4.2
(-2.3) 		15
(3) 		7.6
(-0.6) 		2.7
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.7
(-3)
A 		6.5
(3)
A 		1.7
(-3)
A 		4.1
(-0)
A 		5
B 1.8
(0.9)
A 		2.5
(3)
A 		2.1
(1.8)
A 		0.5
(-3)
A 		2
C 4.9
(-0.3)
A 		9.6
(3)
A 		1
(-3)
A 		5.1
(-0.1)
A 		9
avr 2.8
(-1.4) 		6.2
(3) 		1.6
(-3) 		3.2
(-0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1
(-2.7)
A 		1
(-2.7)
A 		0.8
(-3)
A 		4.5
(3)
A 		1.4
(-2)
A 		1
(-2.7)
A 		4
B 6.9
(3)
A 		1.5
(-2.6)
A 		1.4
(-2.7)
A 		4.4
(0.4)
A 		5.9
(2)
A 		1.1
(-3)
A 		6
C 1.6
(-1.4)
A 		4.9
(3)
A 		0.7
(-2.6)
A 		2.2
(-0.6)
A 		1.2
(-1.9)
A 		0.4
(-3)
A 		5
avr 3.2
(2) 		2.5
(0.5) 		1
(-2.6) 		3.7
(3) 		2.8
(1.1) 		0.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28186
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.B NCBI
Target Description Y48G9A.B_rc /REP_DB=WormBase Gene ID /WP=CE25323 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60708.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48G9A.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G9A.B Y48G9A.B_rc /REP_DB=WormBase Gene ID /WP=CE25323 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF60708.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065106 11/11 Negative Strand Matching Probes A 
Y48G9A.12 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2158609-2160330(+) 94.25 100.0
Sequence
Target Sequence 
>C. ELEGANS:187878_AT
gaatatcgctccaaaaagctctcagagagcaagaaaactcgtggaaaattgcagaatttg
tgcaatttcagtccaaaatctccagaaaaagtttgcctggaagcgaaaaaagcatttttt
tggctatttctgagccctttgatctgaaatttcagctgaaattccatttttcgcgagatt
tccagacaaaatttgagactaaaatcgattttcacatgaaaagtcaagtccctgacccca
gcagatgacgtcattttgttctgtgtctctgcgggtgaccccacacactgccagccggtc
atcttggcgagaaacctagtgtgtgtgtgattgtaatggaatgtgccagctgcaggtgct
tgtgatgtcgaaggaattgagaatttggaagatttcccggcaaaatttgaatttttcact
ttcggcaaatttccgagctccgagctccgcgagcttgtctttgactttcggcaaatttcc
gagctccgagctccgcgagcttgtctttgactttcggcaaatttccgagctccgagctcc
gcgagcttgtctttgactttcctcaaaagtataaacttttcgaagctcagagctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATCGCTCCAAAAAGCTCTCAG 138 327 152 Antisense
GCAATTTCAGTCCAAAATCTCCAGA 317 323 213 Antisense
GCTATTTCTGAGCCCTTTGATCTGA 108 305 274 Antisense
ATGAAAAGTCAAGTCCCTGACCCCA 27 45 367 Antisense
GACCCCAGCAGATGACGTCATTTTG 653 381 385 Antisense
GCCAGCCGGTCATCTTGGCGAGAAA 432 277 441 Antisense
GAAACCTAGTGTGTGTGTGATTGTA 147 357 462 Antisense
TGGAATGTGCCAGCTGCAGGTGCTT 348 547 488 Antisense
GCTGCAGGTGCTTGTGATGTCGAAG 129 297 500 Antisense
CACTTTCGGCAAATTTCCGAGCTCC 231 183 568 Antisense
TAAACTTTTCGAAGCTCAGAGCTCC 501 639 723 Antisense
Sequence Source Affymetrix Proprietary Database