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[187872_at]

Description F31A9.3 /REP_DB=WormBase Gene ID /WP=CE07164 /GEN=arg-1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=EGF domain protein
Cluster 6grp_total > 08      4grp_total > 35      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 80.1
(0.7)
A 		61.9
(-3)
A 		65.9
(-2.2)
A 		91.4
(3)
A 		30
B 52.4
(-2.7)
A 		116.1
(3)
P 		49.4
(-3)
A 		55.8
(-2.4)
A 		67
C 62.2
(-0.5)
P 		94.4
(2.1)
P 		31.1
(-3)
A 		105.6
(3)
P 		75
avr 64.9
(-0.7) 		90.8
(3) 		48.8
(-3) 		84.3
(2.1) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 71.2
(3)
M 		36.2
(-2.8)
A 		35.7
(-2.9)
A 		55.1
(0.3)
A 		48
(-0.9)
M 		35.3
(-3)
A 		36
B 67.1
(3)
P 		52.3
(0.4)
A 		44.8
(-0.9)
A 		44.6
(-1)
A 		33
(-3)
A 		48.6
(-0.3)
A 		34
C 95.3
(3)
A 		78.4
(1.4)
A 		39.6
(-2.4)
A 		62.4
(-0.2)
A 		33.4
(-3)
A 		37.1
(-2.6)
A 		62
avr 77.9
(3) 		55.6
(-0.4) 		40
(-2.7) 		54
(-0.6) 		38.1
(-3) 		40.3
(-2.7) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 29.2
(3)
A 		13.4
(-3)
A 		17.2
(-1.6)
A 		13.4
(-3)
A 		16
B 16.7
(-1.2)
A 		28.7
(3)
P 		11.4
(-3)
A 		11.9
(-2.8)
A 		17
C 20.6
(0.6)
P 		27.1
(3)
P 		10.8
(-3)
A 		17.8
(-0.4)
P 		16
avr 22.2
(2.5) 		23.1
(3) 		13.1
(-3) 		14.4
(-2.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.1
(1.7)
M 		12.9
(1.6)
A 		7.8
(-3)
A 		14
(2.6)
A 		14.5
(3)
M 		8.6
(-2.3)
A 		7
B 23.3
(3)
P 		17.4
(0.1)
A 		10.9
(-3)
A 		11.8
(-2.6)
A 		13.4
(-1.8)
A 		18.1
(0.5)
A 		12
C 35.3
(3)
A 		23.9
(0.3)
A 		10.1
(-3)
A 		12.5
(-2.4)
A 		10.8
(-2.8)
A 		12.4
(-2.5)
A 		25
avr 23.9
(3) 		18.1
(0.6) 		9.6
(-3) 		12.8
(-1.7) 		12.9
(-1.6) 		13
(-1.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18230
Sequence Type Exemplar sequence
Representative Public ID F31A9.3 NCBI
Target Description F31A9.3 /REP_DB=WormBase Gene ID /WP=CE07164 /GEN=arg-1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=EGF domain protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029444 NCBI Caenorhabditis elegans Apex-Related Genes family member (arg-1) (arg-1) mRNA, complete cds. 11/11 None
GENEFINDER00000037699 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1786902:1788521:1 11/11 None
SNAP00000037688 ENSEMBL cdna:SNAP chromosome:CEL140:X:1787661:1788521:1 11/11 None
F31A9.3a ENSEMBL cdna:known chromosome:CEL140:X:1786902:1788400:1 gene:F31A9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029445 8/11 Cross Hyb Matching Probes None
F31A9.3b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180501 2 1 NM_001029444 187872_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1786901-1788521(+) 100.0 100.0
Public Domain and Genome References
Ensembl F31A9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ81271 Apex-related genes protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024615.1| Apex-Related Genes family member (arg-1) [Caenorhabditis elegans] 0.0
blast T16213 APX-1 protein homolog - Caenorhabditis elegans 0.0
blast AAQ81272 Apex-related genes protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024616.1| Apex-Related Genes family member (arg-1) [Caenorhabditis elegans] 0.0
blast T16213 APX-1 protein homolog - Caenorhabditis elegans 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 6.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-6
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 2.6E-37
Pfam IPR006209 EMBL-EBI EGF-like domain 6.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024615.1 1 294-316
F31A9.3a 1 294-316
GENEFINDER00000037699 1 294-316
SNAP00000037688 1 152-174
Sequence
Target Sequence 
>C. ELEGANS:187872_AT
tctgctcaaccgactacaaatgccaatgcccatccgagttcctcgggcctcgatgcgaaa
cgccagtgagcaaagtgcattgcacattggagcgcgtttgcaagcatggaggaacctgtg
tttccgtgaacaggacgaatgtacaatgcaagtgcattcgcgggttcttaggctcactct
gcgagatcggtatccacgggaattgctcggcaatgagatgctctgtagatgagacatgtc
aaatccgggccagctttgcggtctgtgcgaaaaaggaaaagtctgctgaaacagtcacag
gtaccggacctgatgcgctgcactttgcgatgctcgctgtgattggtgtatttgtctgcg
ttgctggtttggccctcgtcgcttccaaatgcaaaaaatctgaagccggcccaattctcc
cgacggtggtttacacagcatctcctaataccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCTCAACCGACTACAAATGCCA 679 605 578 Antisense
GTGCATTGCACATTGGAGCGCGTTT 105 481 652 Antisense
TTAGGCTCACTCTGCGAGATCGGTA 667 681 745 Antisense
GGTATCCACGGGAATTGCTCGGCAA 439 505 766 Antisense
TGATGCGCTGCACTTTGCGATGCTC 669 565 888 Antisense
TGCGATGCTCGCTGTGATTGGTGTA 647 581 903 Antisense
GATTGGTGTATTTGTCTGCGTTGCT 386 435 918 Antisense
CCCTCGTCGCTTCCAAATGCAAAAA 245 259 950 Antisense
AAAAATCTGAAGCCGGCCCAATTCT 157 129 971 Antisense
TTCTCCCGACGGTGGTTTACACAGC 449 673 992 Antisense
TTTACACAGCATCTCCTAATACCAG 520 665 1007 Antisense
Sequence Source Affymetrix Proprietary Database