[Home] | [Total List]

[187871_s_at]

Description R102.4A /REP_DB=WormBase Gene ID /WP=CE23913 /GB=CAB54291.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast GLY1 like
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 43      6grp_total > 41      4grp_total > 40      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 929
1 2 3 4 range
A 1181.1
(-3)
P 		1871.8
(1.8)
P 		2053.4
(3)
P 		1745.7
(0.9)
P 		872
B 1186.5
(-3)
P 		1911.8
(1.7)
P 		2109.6
(3)
P 		1704.4
(0.4)
P 		923
C 1266.3
(-3)
P 		1851.8
(2.3)
P 		1930.7
(3)
P 		1881.5
(2.6)
P 		664
avr 1211.3
(-3) 		1878.5
(1.9) 		2031.2
(3) 		1777.2
(1.1) 		820

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1545
1 2 3 4 5 6 range
A 1154.8
(-1.1)
P 		1269.8
(-0.6)
P 		2193.2
(3)
P 		1533.6
(0.4)
P 		894.1
(-2.1)
P 		669.2
(-3)
P 		1524
B 1019.7
(-1.1)
P 		1474.3
(1.1)
P 		1850.4
(3)
P 		1384.5
(0.7)
P 		865.8
(-1.9)
P 		647.8
(-3)
P 		1203
C 965.9
(-1.2)
P 		1391.9
(1.3)
P 		1693.9
(3)
P 		1447.6
(1.6)
P 		777.2
(-2.3)
P 		649.8
(-3)
P 		1044
avr 1046.8
(-1.1) 		1378.7
(0.5) 		1912.5
(3) 		1455.2
(0.8) 		845.7
(-2.1) 		655.6
(-3) 		1257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 430
(0.7)
P 		406.3
(0.2)
P 		536.8
(3)
P 		255.5
(-3)
P 		281
B 378.4
(-2.3)
P 		472.2
(2.2)
P 		488.8
(3)
P 		363.2
(-3)
P 		126
C 419.2
(-1.3)
P 		532.4
(0.6)
P 		672.9
(3)
P 		317.2
(-3)
P 		356
avr 409.2
(-0.7) 		470.3
(0.7) 		566.2
(3) 		312
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 212.9
(-2)
P 		451.6
(2.5)
P 		477.6
(3)
P 		389
(1.3)
P 		269.8
(-1)
P 		162.9
(-3)
P 		315
B 354.8
(-0.3)
P 		490.7
(3)
P 		449.3
(2)
P 		366.7
(0)
P 		351.8
(-0.3)
P 		241.6
(-3)
P 		249
C 358
(0.9)
P 		424.7
(2.8)
P 		431.1
(3)
P 		291.1
(-0.9)
P 		251.5
(-2)
P 		217.5
(-3)
P 		214
avr 308.6
(-0.6) 		455.7
(3) 		452.7
(2.9) 		348.9
(0.4) 		291
(-1) 		207.3
(-3) 		248
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187871_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10159
Sequence Type Exemplar sequence
Representative Public ID R102.4A NCBI
Target Description R102.4A /REP_DB=WormBase Gene ID /WP=CE23913 /GB=CAB54291.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast GLY1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069578(11), NM_069577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069578 NCBI Caenorhabditis elegans R102.4b (R102.4) mRNA, complete cds. 11/11 None
NM_069577 NCBI Caenorhabditis elegans R102.4a (R102.4) mRNA, complete cds. 11/11 None
SNAP00000034331 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10692057:10694072:-1 11/11 None
GENEFINDER00000034348 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10692057:10695185:-1 11/11 None
R102.4b ENSEMBL cdna:known chromosome:CEL140:IV:10692033:10694400:-1 gene:R102.4 11/11 None
R102.4a.2 ENSEMBL cdna:known chromosome:CEL140:IV:10692057:10695198:-1 gene:R102.4 11/11 None
R102.4a.1 ENSEMBL cdna:known chromosome:CEL140:IV:10692057:10695275:-1 gene:R102.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10692062-10695191(-) 100.0 100.0
Public Domain and Genome References
Ensembl R102.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54293 Hypothetical protein R102.4b [Caenorhabditis elegans] ref|NP_501979.1| R102.4b [Caenorhabditis elegans] sp|Q21890|YF64_CAEEL Hypothetical protein R102.4 in chromosome IV 0.0
blast CAB54291 Hypothetical protein R102.4a [Caenorhabditis elegans] ref|NP_501978.1| R102.4a [Caenorhabditis elegans] 0.0
blast CAE70864 Hypothetical protein CBG17652 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187871_S_AT
gcagcttgctgaacgtcgtgatctcaaagttcatatggatggagctcggatctataatgc
agcagttgcctccaactgttccgtcagcaaaatcgcctcgttcgccgacactgtccaaat
gtgtttctccaaaggactcggtgctccagttggatcaattgttgtaggaccgaaagattt
cattgatcgtgctagacacagtcgtaaggctttgggtggaggatggagacaaagtggaat
tctcgctgctgctgcacatattgctcttgatcatgccgatgcaacaattcgagctgatca
tgaaagagctaaaacattggcaagaatgattaatgacgctactccagaagaatttagaac
gaaggtctttgctgcggaaaaagacatcaccaacatggttcttgttcattgccaaaatgg
agttacagttcaacagctcactgatttcttccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCTTGCTGAACGTCGTGATCTC 666 313 720 Antisense
TGCAGCAGTTGCCTCCAACTGTTCC 309 577 777 Antisense
ACTGTTCCGTCAGCAAAATCGCCTC 46 99 794 Antisense
GTTCGCCGACACTGTCCAAATGTGT 16 443 819 Antisense
GTGTTTCTCCAAAGGACTCGGTGCT 75 487 840 Antisense
GACTCGGTGCTCCAGTTGGATCAAT 133 375 854 Antisense
ACAAAGTGGAATTCTCGCTGCTGCT 442 111 948 Antisense
CTGCTGCTGCACATATTGCTCTTGA 455 237 965 Antisense
TGCTCTTGATCATGCCGATGCAACA 18 581 981 Antisense
GAACGAAGGTCTTTGCTGCGGAAAA 282 347 1076 Antisense
AACAGCTCACTGATTTCTTCCAAAA 102 137 1151 Antisense
Sequence Source Affymetrix Proprietary Database