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[187870_s_at]

Description F45D11.11_rc /REP_DB=WormBase Gene ID /WP=CE20797 /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF39812.1
Cluster 6grp_total > 33      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 2.9
(-2.9)
A 		3.5
(-2.9)
A 		1.6
(-3)
A 		80.2
(3)
A 		79
B 4.4
(2.2)
A 		4.6
(3)
A 		3.1
(-3)
A 		3.6
(-1)
A 		2
C 5.5
(-2.9)
A 		3.8
(-2.9)
A 		1.2
(-3)
A 		212.8
(3)
M 		212
avr 4.3
(-2.9) 		4
(-2.9) 		2
(-3) 		98.9
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 11.7
(3)
A 		1.7
(-2.9)
A 		7.4
(0.5)
A 		1.9
(-2.8)
A 		1.5
(-3)
A 		2.3
(-2.5)
A 		10
B 3.8
(-0.6)
A 		3.7
(-0.8)
A 		5.8
(1.7)
A 		1.8
(-3)
A 		6.9
(3)
A 		2.7
(-1.9)
A 		5
C 2.6
(-2)
A 		8.4
(3)
A 		4.4
(-0.4)
A 		4.2
(-0.6)
A 		2.2
(-2.3)
A 		1.4
(-3)
A 		7
avr 6
(3) 		4.6
(0.8) 		5.9
(2.8) 		2.6
(-2.2) 		3.5
(-0.8) 		2.1
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 1.1
(-2.6)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		11.7
(3)
A 		11
B 1.4
(3)
A 		1.1
(0.4)
A 		0.7
(-3)
A 		0.8
(-2.1)
A 		1
C 1.8
(-2.8)
A 		1.1
(-2.9)
A 		0.4
(-3)
A 		35.9
(3)
M 		36
avr 1.4
(-2.7) 		1
(-2.8) 		0.5
(-3) 		16.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2.1
(3)
A 		0.6
(-2.6)
A 		1.6
(1.1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-2.6)
A 		2
B 1.3
(-0.9)
A 		1.2
(-1.2)
A 		1.4
(-0.7)
A 		0.5
(-3)
A 		2.8
(3)
A 		1
(-1.7)
A 		2
C 1
(-1.6)
A 		2.6
(3)
A 		1.1
(-1.3)
A 		0.9
(-1.9)
A 		0.7
(-2.4)
A 		0.5
(-3)
A 		2
avr 1.5
(3) 		1.5
(3) 		1.4
(2.3) 		0.6
(-3) 		1.3
(1.7) 		0.7
(-2.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187870_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28114
Sequence Type Exemplar sequence
Representative Public ID F45D11.11 NCBI
Target Description F45D11.11_rc /REP_DB=WormBase Gene ID /WP=CE20797 /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF39812.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F45D11.11
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F45D11.11 F45D11.11_rc /REP_DB=WormBase Gene ID /WP=CE20797 /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF39812.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:995292-996217(+) 96.31 100.0
chrII:994535-995460(-) 87.43 90.77
Sequence
Target Sequence 
>C. ELEGANS:187870_S_AT
agcagatcatcgagtgtcacattcaaactgttaatatctatactttctaaactctgagtg
aggatggatttaggatttgggccttctaggctacgaacttttaacttttttagtgacggg
agcagttcgagaacctggtagttttgaattttagagtgatcaactcgcaattctactatt
ttcagtttctttgtacattcacatatttcttcaatacttctacctggtgaattttcgatt
atcaaaatcgtacattggttcctaaagaaaacatcagtaatatgtttgaaccattgtttc
tcagcgaatcctggtacatttaaatatgtccatttgtatccgtttcttgaatacttgcgt
atttctacatttgatttgtcggaattgagaacaaattgaaaatgttgaaacggtctgctg
ttaaaacaaaatgatgttgatgtcatgcttactacagcagtgattggatttttattcaca
actgtaaaaagtcgttttgcttttttcgagagaactgatacggataaccgatccctgatg
ctcatcagtttcagagactcttgcagcgcagattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGATCATCGAGTGTCACATTCA 637 77 269 Antisense
GGATTTGGGCCTTCTAGGCTACGAA 24 509 341 Antisense
AGTGACGGGAGCAGTTCGAGAACCT 351 55 380 Antisense
GTGATCAACTCGCAATTCTACTATT 257 485 424 Antisense
TTTTCAGTTTCTTTGTACATTCACA 581 673 447 Antisense
GAACCATTGTTTCTCAGCGAATCCT 15 347 556 Antisense
ATGTCCATTTGTATCCGTTTCTTGA 599 49 594 Antisense
GATGTTGATGTCATGCTTACTACAG 115 411 701 Antisense
TACGGATAACCGATCCCTGATGCTC 456 647 787 Antisense
GATGCTCATCAGTTTCAGAGACTCT 546 413 805 Antisense
CAGAGACTCTTGCAGCGCAGATTCC 385 205 820 Antisense
Sequence Source Affymetrix Proprietary Database