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[187865_at] ARF

Description B0336.2 /REP_DB=WormBase Gene ID /WP=CE00696 /GEN=arf-1 /GB=AAK18851.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=ARF
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 12      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 36      6grp_total > 23      4grp_total > 48      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2767
1 2 3 4 range
A 4238.8
(-3)
P 		6958.9
(3)
P 		6337
(1.6)
P 		4730.9
(-1.9)
P 		2720
B 4344.9
(-3)
P 		5633.1
(0)
P 		6911.6
(3)
P 		5369.6
(-0.6)
P 		2567
C 4191.7
(-3)
P 		5963.6
(1.8)
P 		6384.2
(3)
P 		4871.2
(-1.1)
P 		2193
avr 4258.5
(-3) 		6185.2
(2.1) 		6544.3
(3) 		4990.6
(-1.1) 		2286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2150
1 2 3 4 5 6 range
A 4523.7
(3)
P 		4428.5
(2.6)
P 		3981.3
(0.5)
P 		3771.4
(-0.4)
P 		3215.3
(-3)
P 		3449.8
(-1.9)
P 		1308
B 4018.8
(1)
P 		4423.8
(2.8)
P 		4470
(3)
P 		3752.6
(-0.1)
P 		4012.9
(1)
P 		3099.1
(-3)
P 		1371
C 5249.5
(3)
P 		4154.4
(-0.7)
P 		4251.1
(-0.4)
P 		4323.5
(-0.2)
P 		3989.1
(-1.3)
P 		3494.4
(-3)
P 		1755
avr 4597.3
(3) 		4335.6
(1.7) 		4234.1
(1.3) 		3949.2
(-0.1) 		3739.1
(-1.1) 		3347.8
(-3) 		1250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1533
1 2 3 4 range
A 1543.3
(2.3)
P 		1510.6
(2.1)
P 		1656.6
(3)
P 		692.5
(-3)
P 		964
B 1385.6
(0.2)
P 		1391.2
(0.2)
P 		1601.6
(3)
P 		1144.3
(-3)
P 		457
C 1387.6
(-0.6)
P 		1714.6
(0.8)
P 		2225.1
(3)
P 		821.4
(-3)
P 		1404
avr 1438.8
(0.5) 		1538.8
(1.2) 		1827.8
(3) 		886.1
(-3) 		942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1112
1 2 3 4 5 6 range
A 833.9
(-3)
P 		1575
(3)
P 		867.1
(-2.7)
P 		956.5
(-2)
P 		970.2
(-1.9)
P 		839.9
(-3)
P 		741
B 1398.3
(0.8)
P 		1472.5
(1.5)
P 		1085.4
(-2.1)
P 		993.9
(-3)
P 		1630.4
(3)
P 		1155.6
(-1.5)
P 		637
C 1945.8
(3)
P 		1267.6
(-0.8)
P 		1082
(-1.8)
P 		869.5
(-3)
P 		1290.8
(-0.7)
P 		1169.8
(-1.3)
P 		1076
avr 1392.7
(2.4) 		1438.4
(3) 		1011.5
(-2.1) 		940
(-3) 		1297.1
(1.3) 		1055.1
(-1.6) 		498
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7059
Sequence Type Exemplar sequence
Representative Public ID B0336.2 NCBI
Target Description B0336.2 /REP_DB=WormBase Gene ID /WP=CE00696 /GEN=arf-1 /GB=AAK18851.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=ARF
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065834 NCBI Caenorhabditis elegans B0336.2 (ARF) mRNA, complete cds. 11/11 None
SNAP00000008881 ENSEMBL cdna:SNAP chromosome:CEL140:III:5716065:5716867:1 11/11 None
GENEFINDER00000008883 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5716065:5716867:1 11/11 None
B0336.2.2 ENSEMBL cdna:known chromosome:CEL140:III:5716062:5717532:1 gene:B0336.2 11/11 None
B0336.2.1 ENSEMBL cdna:known chromosome:CEL140:III:5716064:5717532:1 gene:B0336.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5716063-5716866(+) 100.0 100.0
Public Domain and Genome References
Gene Title ARF
Gene Symbol arf-1.2
Ensembl B0336.2
Entrez Gene 175801 Entrez gene
SwissProt Q10943 EMBL-EBI
WormBase CE00696 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15677_S_AT ADP-ribosylation factor 1 (ARF1) at
ATH1-121501:263321_AT ADP-ribosylation factor 1 (ARF1) at
CANINE:1604375_AT similar to ADP-ribosylation factor 2 cfa
CANINE:1595999_S_AT similar to ADP-ribosylation factor 2 cfa
CANINE:1590694_S_AT similar to ADP-ribosylation factor 2 cfa
CANINE_2:CFA.1871.1.S1_AT similar to ADP-ribosylation factor 2 cfa
CANINE_2:CFAAFFX.20898.1.S1_S_AT similar to ADP-ribosylation factor 2 cfa
DROSOPHILA_2:1624231_S_AT ADP ribosylation factor 79F dm
DROSGENOME1:142723_AT ADP ribosylation factor 79F dm
CHICKEN:GGA.5750.1.S1_S_AT ADP-ribosylation factor 1 gga
PLASMODIUM_ANOPHELES:200065_S_AT ADP-ribosylation factor 1 hs
HG-U133B:200065_S_AT ADP-ribosylation factor 1 hs
HG-U133_PLUS_2:200065_S_AT ADP-ribosylation factor 1 hs
HG-U133A:200065_S_AT ADP-ribosylation factor 1 hs
HG-FOCUS:200065_S_AT ADP-ribosylation factor 1 hs
HG-U133A_2:200065_S_AT ADP-ribosylation factor 1 hs
U133_X3P:200065_S_AT ADP-ribosylation factor 1 hs
HG-U133_PLUS_2:208750_S_AT ADP-ribosylation factor 1 hs
HG-U133A_2:208750_S_AT ADP-ribosylation factor 1 hs
HG-U133A:208750_S_AT ADP-ribosylation factor 1 hs
HU35KSUBD:RC_W45572_F_AT ADP-ribosylation factor 1 hs
HUGENEFL:M84332_AT ADP-ribosylation factor 1 hs
U133_X3P:G3360490_3P_A_AT ADP-ribosylation factor 1 hs
U133_X3P:HS.74571.0.A1_3P_A_AT ADP-ribosylation factor 1 hs
U133_X3P:HS.282187.0.A1_3P_X_AT ADP-ribosylation factor 1 hs
U133_X3P:HS.282187.0.A1_3P_AT ADP-ribosylation factor 1 hs
U133_X3P:244504_3P_X_AT ADP-ribosylation factor 1 hs
HG-U133_PLUS_2:244504_X_AT ADP-ribosylation factor 1 hs
HG-U133B:244504_X_AT ADP-ribosylation factor 1 hs
HG-U95AV2:33987_AT ADP-ribosylation factor 1 hs
HG-U95D:73375_F_AT ADP-ribosylation factor 1 hs
HG-U133_PLUS_2:232175_AT ADP-ribosylation factor 1 hs
HG-U133B:232175_AT ADP-ribosylation factor 1 hs
HU35KSUBB:RC_AA054149_AT ADP-ribosylation factor 1 hs
U133_X3P:HS.286221.0.S1_3P_AT ADP-ribosylation factor 1 hs
HG-U95B:49106_AT ADP-ribosylation factor 1 hs
HG-U95E:77962_AT ADP-ribosylation factor 1 hs
HU35KSUBD:RC_W45572_R_AT ADP-ribosylation factor 1 hs
MOUSE430_2:1426390_A_AT ADP-ribosylation factor 1 mm
MOE430A:1426390_A_AT ADP-ribosylation factor 1 mm
MOUSE430A_2:1426390_A_AT ADP-ribosylation factor 1 mm
MU11KSUBA:D87898_S_AT ADP-ribosylation factor 1 mm
MU11KSUBB:MSA.4088.0_S_AT ADP-ribosylation factor 1 mm
MU11KSUBB:MSA.22435.0_S_AT ADP-ribosylation factor 1 mm
MG-U74AV2:101016_AT ADP-ribosylation factor 1 mm
MOE430A:1426391_AT ADP-ribosylation factor 1 mm
MOUSE430A_2:1426391_AT ADP-ribosylation factor 1 mm
MOUSE430_2:1426391_AT ADP-ribosylation factor 1 mm
MOE430A:1420920_A_AT ADP-ribosylation factor 1 mm
MOUSE430A_2:1420920_A_AT ADP-ribosylation factor 1 mm
MOUSE430_2:1420920_A_AT ADP-ribosylation factor 1 mm
MU19KSUBA:TC14470_AT ADP-ribosylation factor 1, mRNA (cDNA clone MGC:18993 IMAGE:4012689) mm
MU19KSUBA:TC14471_AT Bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830075D03 product:ADP-ribosylation factor 1, full insert sequence mm
MU19KSUBB:TC30324_S_AT ADP-ribosylation factor 1, mRNA (cDNA clone MGC:18993 IMAGE:4012689) mm
RG-U34A:L12380_AT ADP-ribosylation factor 1 rn
RG-U34B:RC_AI010141_AT ADP-ribosylation factor 1 rn
RG-U34B:RC_AA899672_S_AT ADP-ribosylation factor 1 rn
RG-U34C:RC_AI104557_F_AT ADP-ribosylation factor 1 rn
RG-U34C:RC_AI234933_F_AT ADP-ribosylation factor 1 rn
RG-U34C:RC_AI235811_F_AT ADP-ribosylation factor 1 rn
RG-U34C:RC_AI235811_I_AT ADP-ribosylation factor 1 rn
RG-U34C:RC_AI234933_I_AT ADP-ribosylation factor 1 rn
RG-U34C:RC_AI176906_AT ADP-ribosylation factor 1 rn
RAE230A:1367459_AT ADP-ribosylation factor 1 rn
RAE230B:1367459_AT ADP-ribosylation factor 1 rn
RAT230_2:1367459_AT ADP-ribosylation factor 1 rn
RAE230A:1398817_AT ADP-ribosylation factor 1 rn
RAT230_2:1398817_AT ADP-ribosylation factor 1 rn
YEAST_2:1776418_AT ADP-ribosylation factor, GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; functionally interchangeable with Arf2p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18851 Adp-ribosylation factor related protein 1.2 [Caenorhabditis elegans] ref|NP_498235.1| B0336.2 [Caenorhabditis elegans] sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1.0E-100
blast CAE64326 Hypothetical protein CBG09004 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187865_AT
ggaaacgtgttcggcagcttatttaaaggcctcttcggcaaacgggagatgcgtattctg
atggttggattggatgctgccggaaagactacgattttgtacaagttgaagctgggcgag
attgtcacgactatcccaactattggattcaacgtggagactgtcgaatacaagaacatt
tcattcaccgtgtgggatgtcggaggtcaggacaagatccgtccactctggaggcattat
ttccagaacacacaaggacttatctttgttgttgattccaacgatcgtgaacgtgttgga
gaggctcgtgaagagctgatgcgtatgctcgccgaggatgagcttcgtgatgccgttctt
ctggtcttcgccaacaaacaagatcttccacaagccatgaacgccgctgaggtcactgac
aagctcgggctccactcgctcagaaatcgatcgtggtatattcaggccacatgtgcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAACGTGTTCGGCAGCTTATTTA 450 527 16 Antisense
GGCCTCTTCGGCAAACGGGAGATGC 233 541 43 Antisense
GAAGCTGGGCGAGATTGTCACGACT 334 341 123 Antisense
ATTGTCACGACTATCCCAACTATTG 240 3 136 Antisense
AGAACATTTCATTCACCGTGTGGGA 556 73 188 Antisense
AAGAGCTGATGCGTATGCTCGCCGA 663 153 326 Antisense
TTCTTCTGGTCTTCGCCAACAAACA 17 691 371 Antisense
AAGATCTTCCACAAGCCATGAACGC 567 155 395 Antisense
GCCGCTGAGGTCACTGACAAGCTCG 667 283 418 Antisense
GCTCCACTCGCTCAGAAATCGATCG 137 299 444 Antisense
GGTATATTCAGGCCACATGTGCGAC 659 503 470 Antisense
Sequence Source Affymetrix Proprietary Database