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[187863_s_at]

Description F26F12.3 /REP_DB=WormBase Gene ID /WP=CE07148 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19811 protein_id:AAC25890.1
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 30      6grp_total > 28      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 812
1 2 3 4 range
A 914.1
(1.8)
P 		425.6
(-1.8)
P 		263.9
(-3)
P 		1075.9
(3)
P 		812
B 921.8
(2.4)
P 		399.7
(-1.9)
P 		272.3
(-3)
P 		999.2
(3)
P 		727
C 867.1
(2.3)
P 		442.6
(-1.5)
P 		272
(-3)
P 		940.2
(3)
P 		668
avr 901
(2.2) 		422.6
(-1.8) 		269.4
(-3) 		1005.1
(3) 		736

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 758
1 2 3 4 5 6 range
A 934.7
(3)
P 		759.4
(0.3)
P 		548.2
(-3)
P 		576.8
(-2.6)
P 		886.6
(2.3)
P 		766.2
(0.4)
P 		387
B 1059
(3)
P 		739.6
(-1.2)
P 		598.2
(-3)
P 		648.9
(-2.3)
P 		714.5
(-1.5)
P 		728
(-1.3)
P 		461
C 1306.5
(3)
P 		792.3
(-1.2)
P 		568.4
(-3)
P 		655
(-2.3)
P 		677.5
(-2.1)
P 		690.9
(-2)
P 		738
avr 1100.1
(3) 		763.8
(-0.8) 		571.6
(-3) 		626.9
(-2.4) 		759.5
(-0.9) 		728.4
(-1.2) 		529
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 332.8
(3)
P 		92.4
(-2.5)
P 		69
(-3)
P 		157.5
(-1)
P 		264
B 293.9
(3)
P 		98.7
(-2.1)
P 		63.1
(-3)
P 		212.9
(0.9)
P 		231
C 287
(3)
P 		127.2
(-2)
P 		94.8
(-3)
P 		158.5
(-1)
P 		192
avr 304.6
(3) 		106.1
(-2.2) 		75.6
(-3) 		176.3
(-0.4) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 172.3
(-0.9)
P 		270.1
(3)
P 		119.4
(-3)
P 		146.3
(-1.9)
P 		267.6
(2.9)
P 		186.5
(-0.3)
P 		151
B 368.5
(3)
P 		246.2
(-0.3)
P 		145.3
(-3)
P 		171.9
(-2.3)
P 		290.3
(0.9)
P 		271.5
(0.4)
P 		223
C 484.3
(3)
P 		241.7
(-1.1)
P 		144.7
(-2.8)
P 		131.7
(-3)
P 		219.2
(-1.5)
P 		231.3
(-1.3)
P 		353
avr 341.7
(3) 		252.7
(0.4) 		136.5
(-3) 		150
(-2.6) 		259
(0.6) 		229.8
(-0.3) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187863_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12233
Sequence Type Exemplar sequence
Representative Public ID F26F12.3 NCBI
Target Description F26F12.3 /REP_DB=WormBase Gene ID /WP=CE07148 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19811 protein_id:AAC25890.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028685(11), NM_072126(11), NM_072127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028685 NCBI Caenorhabditis elegans F26F12.3c (F26F12.3) mRNA, complete cds. 11/11 None
NM_072126 NCBI Caenorhabditis elegans F26F12.3a (F26F12.3) mRNA, complete cds. 11/11 A 
NM_072127 NCBI Caenorhabditis elegans F26F12.3b (F26F12.3) mRNA, complete cds. 11/11 None
SNAP00000007008 ENSEMBL cdna:SNAP chromosome:CEL140:V:5842426:5847025:-1 11/11 None
GENEFINDER00000007014 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5842426:5848269:-1 11/11 None
F26F12.3c.1 ENSEMBL cdna:known chromosome:CEL140:V:5841563:5845324:-1 gene:F26F12.3 11/11 None
F26F12.3c.2 ENSEMBL cdna:known chromosome:CEL140:V:5841564:5848313:-1 gene:F26F12.3 11/11 None
F26F12.3a.2 ENSEMBL cdna:known chromosome:CEL140:V:5842426:5848315:-1 gene:F26F12.3 11/11 A 
F26F12.3b ENSEMBL cdna:known chromosome:CEL140:V:5842426:5847071:-1 gene:F26F12.3 11/11 A 
F26F12.3a.1 ENSEMBL cdna:known chromosome:CEL140:V:5842426:5848313:-1 gene:F26F12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5842425-5848269(-) 100.0 100.0
Public Domain and Genome References
Ensembl F26F12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023856 F26F12.3c [Caenorhabditis elegans] gb|AAV58870.1| Hypothetical protein F26F12.3c [Caenorhabditis elegans] 0.0
blast NP_504528 F26F12.3b [Caenorhabditis elegans] gb|AAD34666.1| Hypothetical protein F26F12.3b [Caenorhabditis elegans] 0.0
blast NP_504527 F26F12.3a [Caenorhabditis elegans] gb|AAC25890.2| Hypothetical protein F26F12.3a [Caenorhabditis elegans] 0.0
blast CAE64558 Hypothetical protein CBG09307 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187863_S_AT
gcatccaatgcgcgtgcggatacacgatggaggttcgagatcaggcatctcgtgccgagt
gtggaggatgtggacgtgtcttctgtccacaaaatcttgctatgctcgaagttgcgtact
ggtctcgtgatgaaatgactggagcagcagtcagaaaattggagacatcggctgtcttgc
cggctcgttgcgtcgagtcaattgttgcctccaagcaaatcaagaaagaattctcggatg
tatgtggtgaagcccgtcaacttcgtttctctacatccaagaaaaccgagtttgagaaag
cagttcgcaaactcaaaagtacctacgctggcgtagaaaaacttcgcgatatccgtaaga
cggtattgaccatcgtcgaaaacggactcgcctatgtatatatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCCAATGCGCGTGCGGATACAC 509 309 2108 Antisense
AGATCAGGCATCTCGTGCCGAGTGT 483 65 2145 Antisense
GGAGGATGTGGACGTGTCTTCTGTC 155 517 2170 Antisense
GTCTTCTGTCCACAAAATCTTGCTA 485 467 2185 Antisense
GTTGCGTACTGGTCTCGTGATGAAA 271 437 2218 Antisense
TGCGTCGAGTCAATTGTTGCCTCCA 550 583 2296 Antisense
TGTATGTGGTGAAGCCCGTCAACTT 408 557 2346 Antisense
AACTCAAAAGTACCTACGCTGGCGT 599 99 2417 Antisense
AACTTCGCGATATCCGTAAGACGGT 469 135 2447 Antisense
GACCATCGTCGAAAACGGACTCGCC 442 383 2475 Antisense
AACGGACTCGCCTATGTATATATCG 698 143 2488 Antisense
Sequence Source Affymetrix Proprietary Database