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[187862_at]

Description C05D10.4 /REP_DB=WormBase Gene ID /WP=CE01127 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) SW:Q11181 protein_id:AAA20988.1
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 62      6grp_total > 81      4grp_total > 51      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 394.9
(0.3)
P 		484
(3)
P 		457.3
(2.2)
P 		283.6
(-3)
P 		200
B 469.5
(0.5)
P 		623.7
(3)
P 		440.6
(-0)
P 		260.2
(-3)
P 		364
C 418.6
(0.6)
P 		520.8
(3)
P 		465.5
(1.7)
P 		264.6
(-3)
P 		256
avr 427.7
(0.5) 		542.8
(3) 		454.5
(1.1) 		269.5
(-3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 598
1 2 3 4 5 6 range
A 413.4
(-1.8)
P 		591
(0.1)
P 		453.7
(-1.4)
P 		850.6
(3)
P 		618.3
(0.4)
P 		308.7
(-3)
P 		542
B 461.3
(-0.3)
P 		544.8
(0.7)
P 		481.9
(-0.1)
P 		599.8
(1.4)
P 		723.9
(3)
P 		252.8
(-3)
P 		471
C 464.5
(-0.3)
P 		606.7
(1.9)
P 		478.7
(-0)
P 		683.5
(3)
P 		636.1
(2.3)
P 		280.6
(-3)
P 		403
avr 446.4
(-0.7) 		580.8
(1.2) 		471.4
(-0.3) 		711.3
(3) 		659.4
(2.3) 		280.7
(-3) 		431
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 143.8
(3)
P 		105.1
(0.7)
P 		119.5
(1.6)
P 		41.5
(-3)
P 		102
B 149.7
(2.7)
P 		154
(3)
P 		102.1
(-0.2)
P 		55.4
(-3)
P 		99
C 138.6
(1.8)
P 		149.7
(2.4)
P 		162.2
(3)
P 		44.6
(-3)
P 		118
avr 144
(3) 		136.3
(2.5) 		127.9
(2) 		47.2
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 76.2
(-3)
P 		210.2
(2.8)
P 		98.8
(-2)
P 		215.7
(3)
P 		186.6
(1.8)
P 		75.2
(-3)
P 		141
B 160.5
(-1)
P 		181.3
(-0.4)
P 		117
(-2.3)
P 		158.9
(-1.1)
P 		294.1
(3)
P 		94.3
(-3)
P 		200
C 172.2
(1.2)
P 		185.1
(1.9)
P 		121.8
(-1.5)
P 		137.5
(-0.7)
P 		205.8
(3)
P 		93.9
(-3)
P 		112
avr 136.3
(-0.9) 		192.2
(1.4) 		112.5
(-1.9) 		170.7
(0.5) 		228.8
(3) 		87.8
(-3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8056
Sequence Type Exemplar sequence
Representative Public ID C05D10.4 NCBI
Target Description C05D10.4 /REP_DB=WormBase Gene ID /WP=CE01127 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) SW:Q11181 protein_id:AAA20988.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065923(11), NM_065922(11), NM_171149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065923 NCBI Caenorhabditis elegans C05D10.4b (C05D10.4) mRNA, complete cds. 11/11 A 
NM_065922 NCBI Caenorhabditis elegans C05D10.4a (C05D10.4) mRNA, complete cds. 11/11 A 
NM_171149 NCBI Caenorhabditis elegans C05D10.4c (C05D10.4) mRNA, complete cds. 11/11 None
SNAP00000011487 ENSEMBL cdna:SNAP chromosome:CEL140:III:6088847:6089940:-1 11/11 None
GENEFINDER00000011502 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6088847:6091710:-1 11/11 None
C05D10.4b ENSEMBL cdna:known chromosome:CEL140:III:6088626:6102681:-1 gene:C05D10.4 11/11 A 
C05D10.4c ENSEMBL cdna:known chromosome:CEL140:III:6088847:6090885:-1 gene:C05D10.4 11/11 None
C05D10.4a ENSEMBL cdna:known chromosome:CEL140:III:6088847:6102802:-1 gene:C05D10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6088882-6090884(-) 100.0 100.0
Public Domain and Genome References
Ensembl C05D10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15545 Hypothetical protein C05D10.4b [Caenorhabditis elegans] ref|NP_498324.2| C05D10.4b [Caenorhabditis elegans] sp|Q11181|YPC4_CAEEL Hypothetical protein C05D10.4 in chromosome III 0.0
blast AAM15544 Hypothetical protein C05D10.4a [Caenorhabditis elegans] ref|NP_498323.2| C05D10.4a [Caenorhabditis elegans] 0.0
blast AAM15546 Hypothetical protein C05D10.4c [Caenorhabditis elegans] ref|NP_741170.1| C05D10.4c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-4
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-4
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-4
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-4
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:187862_AT
acaatcggtacagctttcagtcatgtgttcaactccggaaatcgtgtccagaccttgaca
gtactgcgatgagcaacatggaacaacaccgggtatcaaagaaacgaactcggcgagcaa
aggagaagatgtcacaagccgcgtggaaacggaaaactgttaaagaatggagtttggatg
acgtgttgctatggttgcagtctgcacagatggatgatgtggctgggttactgattggtt
atgatcttagaggagaagatttgcttcagtggaatgaccaaactttagctcaactcggcg
tatccaatcctgaaatccgcaaaaagctgctcgacgatctttcaaaaatcatagaaaatg
gtccagagcctgcacaagaagatattcgaaataatcatagaacactcttcgacatagtaa
aacaaactagttatgatcaggtcttagcagtagagacaccacttacgacacgtgacatta
cagtaacccatggcagacttggatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATCGGTACAGCTTTCAGTCATG 710 113 512 Antisense
TTCAGTCATGTGTTCAACTCCGGAA 553 687 527 Antisense
AACTCCGGAAATCGTGTCCAGACCT 354 137 542 Antisense
GTCCAGACCTTGACAGTACTGCGAT 394 477 557 Antisense
GTGTTGCTATGGTTGCAGTCTGCAC 541 485 694 Antisense
GATGTGGCTGGGTTACTGATTGGTT 567 407 727 Antisense
GACCAAACTTTAGCTCAACTCGGCG 135 381 787 Antisense
AACTCGGCGTATCCAATCCTGAAAT 637 139 803 Antisense
GAAAATGGTCCAGAGCCTGCACAAG 60 355 865 Antisense
GACACCACTTACGACACGTGACATT 160 369 966 Antisense
GTAACCCATGGCAGACTTGGATGTT 65 463 994 Antisense
Sequence Source Affymetrix Proprietary Database