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[187861_at]

Description C56C10.2 /REP_DB=WormBase Gene ID /WP=CE02567 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18890 protein_id:AAA68770.1
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 42      6grp_total > 0      4grp_total > 45      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 52.7
(-0.1)
P 		63.9
(1.9)
P 		36.5
(-3)
A 		70.2
(3)
M 		34
B 60.9
(2.6)
P 		62.1
(3)
P 		47.8
(-2.2)
A 		45.5
(-3)
P 		17
C 105.1
(3)
P 		57.1
(-1.5)
P 		54.7
(-1.8)
P 		41.7
(-3)
P 		63
avr 72.9
(3) 		61
(0.3) 		46.3
(-3) 		52.5
(-1.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 43.6
(-3)
A 		77.1
(1.7)
P 		85.5
(2.9)
P 		86.5
(3)
P 		60.8
(-0.6)
P 		58.6
(-0.9)
P 		43
B 103.3
(3)
P 		57.5
(-2.1)
P 		66.7
(-1.1)
P 		49.1
(-3)
A 		82.3
(0.7)
P 		97.8
(2.4)
P 		54
C 64.4
(-2.8)
P 		192.5
(3)
A 		74.3
(-2.4)
P 		105.5
(-1)
P 		81.2
(-2.1)
P 		60.9
(-3)
P 		132
avr 70.4
(-3) 		109
(3) 		75.5
(-2.2) 		80.4
(-1.4) 		74.8
(-2.3) 		72.4
(-2.7) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 19.2
(3)
P 		13.9
(-0.3)
P 		9.5
(-3)
A 		10.3
(-2.5)
M 		10
B 19.4
(3)
P 		15.3
(0.5)
P 		11.1
(-2.1)
A 		9.7
(-3)
P 		10
C 34.8
(3)
P 		16.4
(-1)
P 		19.1
(-0.4)
P 		7
(-3)
P 		28
avr 24.5
(3) 		15.2
(-0.6) 		13.2
(-1.4) 		9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 8
(-3)
A 		27.4
(3)
P 		18.6
(0.3)
P 		21.9
(1.3)
P 		18.4
(0.2)
P 		14.3
(-1.1)
P 		19
B 36
(2.9)
P 		19.1
(-1.4)
P 		16.2
(-2.2)
P 		13
(-3)
A 		33.4
(2.2)
P 		36.5
(3)
P 		24
C 23.9
(-2.2)
P 		58.7
(3)
A 		18.9
(-3)
P 		21.2
(-2.7)
P 		26.3
(-1.9)
P 		20.4
(-2.8)
P 		40
avr 22.6
(-1.4) 		35.1
(3) 		17.9
(-3) 		18.7
(-2.7) 		26
(-0.2) 		23.7
(-1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5488
Sequence Type Exemplar sequence
Representative Public ID C56C10.2 NCBI
Target Description C56C10.2 /REP_DB=WormBase Gene ID /WP=CE02567 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18890 protein_id:AAA68770.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062941(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062941 NCBI Caenorhabditis elegans C56C10.1 (C56C10.1) mRNA, complete cds. 10/11 A 
SNAP00000022070 ENSEMBL cdna:SNAP chromosome:CEL140:II:6601269:6603309:1 10/11 None
GENEFINDER00000022083 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6601269:6603324:1 10/11 None
C56C10.1 ENSEMBL cdna:known chromosome:CEL140:II:6601230:6603363:1 gene:C56C10.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6601265-6601630(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56C10.1
Entrez Gene 174095 Entrez gene
SwissProt Q18891 EMBL-EBI
WormBase CE30636 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605988_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE:1590869_S_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFA.19528.1.S1_S_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFA.19528.2.S1_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFA.20336.1.S1_S_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFA.2635.1.A1_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFAAFFX.18843.1.S1_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
HU35KSUBA:RC_AA463624_AT vacuolar protein sorting 33B (yeast) hs
HU35KSUBA:AA482390_AT vacuolar protein sorting 33B (yeast) hs
HG-U133A:218415_AT vacuolar protein sorting 33B (yeast) hs
HG-U133_PLUS_2:218415_AT vacuolar protein sorting 33B (yeast) hs
HG-U133A_2:218415_AT vacuolar protein sorting 33B (yeast) hs
U133_X3P:G9945311_3P_S_AT vacuolar protein sorting 33B (yeast) hs
U133_X3P:4870633C_3P_AT vacuolar protein sorting 33B (yeast) hs
HG-U133A_2:44111_AT vacuolar protein sorting 33B (yeast) hs
HG-FOCUS:44111_AT vacuolar protein sorting 33B (yeast) hs
HG-U133_PLUS_2:44111_AT vacuolar protein sorting 33B (yeast) hs
HG-U133A:44111_AT vacuolar protein sorting 33B (yeast) hs
HG-U95B:44111_AT vacuolar protein sorting 33B (yeast) hs
MOUSE430A_2:1427933_AT vacuolar protein sorting 33B (yeast) mm
MOE430A:1427933_AT vacuolar protein sorting 33B (yeast) mm
MOUSE430_2:1427933_AT vacuolar protein sorting 33B (yeast) mm
MG-U74CV2:134790_AT vacuolar protein sorting 33B (yeast) mm
RT-U34:U35245_G_AT vacuolar protein sorting 33B (yeast) rn
RG-U34A:U35245_G_AT vacuolar protein sorting 33B (yeast) rn
RT-U34:U35245_AT vacuolar protein sorting 33B (yeast) rn
RG-U34A:U35245_AT vacuolar protein sorting 33B (yeast) rn
RG-U34A:RC_AI059963_AT vacuolar protein sorting 33B (yeast) rn
RG-U34A:RC_AI072341_G_AT vacuolar protein sorting 33B (yeast) rn
RAE230A:1370521_AT vacuolar protein sorting 33B (yeast) rn
RAT230_2:1370521_AT vacuolar protein sorting 33B (yeast) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9306 protein secretion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68769 Hypothetical protein C56C10.1 [Caenorhabditis elegans] ref|NP_495342.2| C56C10.1 [Caenorhabditis elegans] 0.0
blast CAE60661 Hypothetical protein CBG04314 [Caenorhabditis briggsae] 1.0E-135
blast CAG31522 hypothetical protein [Gallus gallus] ref|NP_001026519.1| hypothetical protein LOC425858 [Gallus gallus] 1.0E-61
Sequence
Target Sequence 
>C. ELEGANS:187861_AT
gtaccgccgagctggaaatcgatgagactttgcacttgcttcggatggttatgcaaaggg
aattcatacattatttagaaacattaccaggaacaaaagagctttttatcgataaatgtc
tgttaagaccactcgatatgattgccacatcatcagatatgaaacgacacggagtgaaac
gaataatgcattttgatttacagaaatcaccacaggtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCGCCGAGCTGGAAATCGATGA 234 459 23 Antisense
ATCGATGAGACTTTGCACTTGCTTC 109 37 40 Antisense
CTTTGCACTTGCTTCGGATGGTTAT 426 219 50 Antisense
TGCTTCGGATGGTTATGCAAAGGGA 436 559 59 Antisense
TATTTAGAAACATTACCAGGAACAA 311 449 94 Antisense
GAGCTTTTTATCGATAAATGTCTGT 255 389 121 Antisense
AAATGTCTGTTAAGACCACTCGATA 210 121 136 Antisense
GACCACTCGATATGATTGCCACATC 165 385 149 Antisense
TGATTGCCACATCATCAGATATGAA 49 563 161 Antisense
CATCAGATATGAAACGACACGGAGT 79 213 173 Antisense
GATTTACAGAAATCACCACAGGTAA 686 425 217 Antisense
Sequence Source Affymetrix Proprietary Database