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[187860_s_at]

Description F55C12.1 /REP_DB=WormBase Gene ID /WP=CE02770 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20813 protein_id:AAC71161.1
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 18      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 50      6grp_total > 18      4grp_total > 20      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 457.7
(1.1)
P 		455.7
(1)
P 		268.1
(-3)
P 		546.9
(3)
P 		279
B 538.8
(0.9)
P 		376.4
(-3)
P 		383.9
(-2.8)
P 		623.3
(3)
P 		247
C 486.6
(-0.2)
P 		535
(1.1)
P 		376.4
(-3)
P 		608.5
(3)
P 		232
avr 494.4
(0.6) 		455.7
(-0.3) 		342.8
(-3) 		592.9
(3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 554
1 2 3 4 5 6 range
A 832.4
(3)
P 		523.5
(-0.7)
P 		332.6
(-3)
P 		401.5
(-2.2)
P 		588.6
(0.1)
P 		541.1
(-0.5)
P 		500
B 599.2
(3)
P 		480.4
(0.8)
P 		278
(-3)
P 		510.9
(1.4)
P 		519.7
(1.5)
P 		359.5
(-1.5)
P 		321
C 779.8
(3)
P 		528.9
(-0.8)
P 		388.5
(-3)
P 		465.8
(-1.8)
P 		409.6
(-2.7)
P 		433.1
(-2.3)
P 		391
avr 737.1
(3) 		510.9
(-0.4) 		333
(-3) 		459.4
(-1.1) 		506
(-0.4) 		444.6
(-1.3) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 166.6
(3)
P 		98.9
(-1.2)
P 		70.1
(-3)
P 		80.1
(-2.4)
P 		97
B 171.8
(3)
P 		93
(-2.7)
P 		89
(-3)
P 		132.8
(0.2)
P 		83
C 161.1
(3)
P 		153.8
(2.3)
P 		131.2
(-0.1)
P 		102.6
(-3)
P 		59
avr 166.5
(3) 		115.2
(-1.4) 		96.8
(-3) 		105.2
(-2.3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 153.4
(1.3)
P 		186.2
(3)
P 		72.4
(-3)
P 		101.8
(-1.4)
P 		177.6
(2.5)
P 		131.8
(0.1)
P 		114
B 208.5
(2.9)
P 		159.9
(0.9)
P 		67.5
(-3)
P 		135.3
(-0.2)
P 		211.2
(3)
P 		134
(-0.2)
P 		144
C 289.1
(3)
P 		161.4
(-0.9)
P 		98.9
(-2.8)
P 		93.7
(-3)
P 		132.5
(-1.8)
P 		145
(-1.4)
P 		195
avr 217
(3) 		169.2
(0.9) 		79.6
(-3) 		110.3
(-1.7) 		173.8
(1.1) 		136.9
(-0.5) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187860_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4541
Sequence Type Exemplar sequence
Representative Public ID F55C12.1 NCBI
Target Description F55C12.1 /REP_DB=WormBase Gene ID /WP=CE02770 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20813 protein_id:AAC71161.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182237(11), NM_062774(11), NM_182236(11), NM_062775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182237 NCBI Caenorhabditis elegans F55C12.1d (F55C12.1) mRNA, complete cds. 11/11 None
NM_062774 NCBI Caenorhabditis elegans F55C12.1b (F55C12.1) mRNA, complete cds. 11/11 None
NM_182236 NCBI Caenorhabditis elegans F55C12.1c (F55C12.1) mRNA, complete cds. 11/11 None
NM_062775 NCBI Caenorhabditis elegans F55C12.1a (F55C12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000011038 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5886418:5892062:1 9/11 None
F55C12.1d.2 ENSEMBL cdna:known chromosome:CEL140:II:5884513:5892626:1 gene:F55C12.1 11/11 None
F55C12.1d.1 ENSEMBL cdna:known chromosome:CEL140:II:5884515:5892627:1 gene:F55C12.1 11/11 None
F55C12.1b ENSEMBL cdna:known chromosome:CEL140:II:5886318:5892190:1 gene:F55C12.1 11/11 None
F55C12.1c ENSEMBL cdna:known chromosome:CEL140:II:5886323:5892190:1 gene:F55C12.1 11/11 None
F55C12.1a ENSEMBL cdna:known chromosome:CEL140:II:5890450:5892190:1 gene:F55C12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011036 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5890455-5892187(+) 100.0 100.0
Public Domain and Genome References
Ensembl F55C12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN39670 Hypothetical protein F55C12.1d [Caenorhabditis elegans] ref|NP_872037.1| F55C12.1d [Caenorhabditis elegans] 0.0
blast AAK73877 Hypothetical protein F55C12.1b [Caenorhabditis elegans] ref|NP_495175.1| F55C12.1b [Caenorhabditis elegans] 0.0
blast AAC71161 Hypothetical protein F55C12.1a [Caenorhabditis elegans] ref|NP_495176.1| F55C12.1a [Caenorhabditis elegans] 0.0
blast AAN39669 Hypothetical protein F55C12.1c [Caenorhabditis elegans] ref|NP_872036.1| F55C12.1c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187860_S_AT
gatacaccgtcacttgctgatgaacttgccggtggtgattcttctcagcttctagatgct
cttcgtgagcaggaaatctgcaatcagaagcttcgagtctacatcaatggaattctgatg
cgtgtcattgagaggcatccagaaatccttgagatcggagaagaaggaatcctctccaag
ttgacggtgcgccggagaatctcagtcctcgccaacgtcgtcgtcatcatcgattccaga
agagtcatcatcaccgacactttcagcaagaatctccgcctaccttccctcatcgtttct
tcgatggggatgaatagacacatgacgtcatcaacgattggcactcaattccttgtgacg
tggcatgcaacatttagtctttttttttcttttctccatccctgtgattttcaaaatgct
ttacttcaaatgtttctttgtacaatctcctcgtttttagtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACACCGTCACTTGCTGATGAAC 284 423 847 Antisense
TGAACTTGCCGGTGGTGATTCTTCT 302 569 867 Antisense
GATTCTTCTCAGCTTCTAGATGCTC 563 431 883 Antisense
AGGAATCCTCTCCAAGTTGACGGTG 251 55 1011 Antisense
GTTGACGGTGCGCCGGAGAATCTCA 146 439 1026 Antisense
CAACGTCGTCGTCATCATCGATTCC 473 187 1059 Antisense
AAGAGTCATCATCACCGACACTTTC 121 153 1086 Antisense
GACACTTTCAGCAAGAATCTCCGCC 456 367 1102 Antisense
GACGTCATCAACGATTGGCACTCAA 472 377 1170 Antisense
TTTCTCCATCCCTGTGATTTTCAAA 385 671 1237 Antisense
TGTACAATCTCCTCGTTTTTAGTCC 668 555 1285 Antisense
Sequence Source Affymetrix Proprietary Database