[Home] | [Total List]

[187859_s_at]

Description K08F11.6 /REP_DB=WormBase Gene ID /WP=CE11960 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q94266 protein_id:AAB09158.1
Cluster 4grp_high_8_8 > 11      6grp_total > 63      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 42.2
(1.6)
P 		46.7
(3)
M 		26.9
(-3)
A 		37.2
(0.1)
A 		20
B 46.2
(3)
A 		35.4
(-1.1)
P 		30.4
(-3)
P 		45.9
(2.9)
P 		16
C 29.9
(-3)
A 		54.4
(2.4)
A 		34.4
(-2)
P 		57.2
(3)
P 		27
avr 39.4
(0.3) 		45.5
(2.5) 		30.6
(-3) 		46.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 5.3
(-3)
A 		34.5
(0.1)
A 		59.4
(2.8)
A 		24.3
(-1)
A 		53.7
(2.2)
P 		61.4
(3)
P 		56
B 29.8
(3)
A 		27.9
(2.2)
P 		25.1
(0.9)
A 		26
(1.3)
A 		23
(0)
A 		16.1
(-3)
A 		14
C 37.5
(-2.6)
A 		48.9
(0.3)
P 		59.6
(3)
P 		42.1
(-1.4)
P 		41.3
(-1.6)
M 		35.8
(-3)
A 		24
avr 24.2
(-3) 		37.1
(0.3) 		48
(3) 		30.8
(-1.3) 		39.3
(0.8) 		37.8
(0.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 15.3
(3)
P 		10.1
(-0.2)
M 		7
(-2)
A 		5.4
(-3)
A 		10
B 14.7
(3)
A 		8.7
(-1.7)
P 		7
(-3)
P 		9.8
(-0.8)
P 		8
C 9.9
(-2.7)
A 		15.6
(3)
A 		12
(-0.6)
P 		9.6
(-3)
P 		6
avr 13.3
(3) 		11.5
(0.8) 		8.7
(-2.5) 		8.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1
(-3)
A 		12.3
(1.5)
A 		12.9
(1.7)
A 		6.2
(-0.9)
A 		16.2
(3)
P 		14.9
(2.5)
P 		15
B 10.4
(3)
A 		9.3
(1.5)
P 		6.1
(-2.9)
A 		6.9
(-1.8)
A 		9.3
(1.5)
A 		6
(-3)
A 		4
C 13.9
(1.8)
A 		14.9
(2.7)
P 		15.2
(3)
P 		8.5
(-3)
P 		13.4
(1.4)
M 		12
(0.1)
A 		7
avr 8.4
(-1.8) 		12.2
(2.2) 		11.4
(1.3) 		7.2
(-3) 		13
(3) 		11
(0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187859_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11151
Sequence Type Exemplar sequence
Representative Public ID K08F11.6 NCBI
Target Description K08F11.6 /REP_DB=WormBase Gene ID /WP=CE11960 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q94266 protein_id:AAB09158.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K08F11.6 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:4725955:4727954:-1 gene:K08F11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058707 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000028628 6/11 Cross Hyb Matching Probes None
SNAP00000028623 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035331 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:22712-23485(-) 93.22 93.22
chrIV:4725960-4726766(-) 100.0 100.0
Public Domain and Genome References
Ensembl K08F11.6
Sequence
Target Sequence 
>C. ELEGANS:187859_S_AT
agcataatgcgagatctgaagcgtgccaacgaagaatggggtacaactgaagcctcgaag
gcgatagaggaaaatccgcggatcgtggtggcttccgtggaggtggcgatcgaggaggct
tcagaggactttcaacagatcctggtggaggtggaggcttccgtggtagatcagaagacc
gcgatggaggatttagagggggattcggtggagaccgaggaggctttaaaagacgtggag
gcgatcgaggaggattcagaggacacgacagaggtggtggcttccgtggtgggcgaggtg
gagaccgaggcggtttccgtggtcgtcgttaattctgatatcagttgctgtttttgcaat
ttgttgtttctctgtgttctccatttttatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATAATGCGAGATCTGAAGCGTG 196 75 52 Antisense
GAAAATCCGCGGATCGTGGTGGCTT 626 353 121 Antisense
GAGGCTTCAGAGGACTTTCAACAGA 500 405 166 Antisense
GGACTTTCAACAGATCCTGGTGGAG 172 525 177 Antisense
TGGAGGCTTCCGTGGTAGATCAGAA 303 549 203 Antisense
GTAGATCAGAAGACCGCGATGGAGG 349 453 217 Antisense
GTGGAGACCGAGGAGGCTTTAAAAG 94 489 259 Antisense
GGACACGACAGAGGTGGTGGCTTCC 586 525 312 Antisense
TTCTGATATCAGTTGCTGTTTTTGC 363 693 384 Antisense
CAATTTGTTGTTTCTCTGTGTTCTC 318 181 408 Antisense
TTCTCTGTGTTCTCCATTTTTATTA 240 693 419 Antisense
Sequence Source Affymetrix Proprietary Database