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[187855_at]

Description Y48B6A.15 /REP_DB=WormBase Gene ID /WP=CE22131 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U2A5 protein_id:CAB54443.1
Cluster 6grp_total > 80      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 10.4
(-2)
A 		42.9
(3)
A 		4.8
(-2.9)
A 		4
(-3)
A 		39
B 28.1
(2.4)
A 		31
(3)
A 		10.2
(-1.5)
A 		3.5
(-3)
A 		28
C 4.2
(-2.6)
A 		13.8
(-1.2)
A 		1.8
(-3)
A 		41.8
(3)
A 		40
avr 14.2
(-0.8) 		29.2
(3) 		5.6
(-3) 		16.4
(-0.3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 11.8
(-1.4)
A 		2.1
(-3)
A 		3.6
(-2.8)
A 		39.1
(3)
A 		6.1
(-2.4)
A 		4.5
(-2.6)
A 		37
B 3.8
(-1.1)
A 		4.9
(0.4)
A 		5.9
(1.9)
A 		2.5
(-3)
A 		6.7
(3)
A 		3.8
(-1.1)
A 		4
C 9.6
(-2.3)
A 		29.7
(0.9)
A 		4.9
(-3)
A 		42.8
(3)
A 		5.8
(-2.9)
A 		14
(-1.6)
A 		38
avr 8.4
(-2.1) 		12.2
(-1.1) 		4.8
(-3) 		28.1
(3) 		6.2
(-2.6) 		7.4
(-2.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.8
(-0.8)
A 		9.3
(3)
A 		1.3
(-2.5)
A 		0.6
(-3)
A 		9
B 8.9
(3)
A 		7.7
(2.1)
A 		2.4
(-1.8)
A 		0.8
(-3)
A 		8
C 1.4
(-2.3)
A 		4
(0.1)
A 		0.6
(-3)
A 		7.1
(3)
A 		7
avr 4.7
(0.5) 		7
(3) 		1.4
(-3) 		2.8
(-1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.2
(-2.1)
A 		0.8
(-3)
A 		0.8
(-3)
A 		9.9
(3)
A 		1.8
(-2.3)
A 		1.1
(-2.8)
A 		9
B 1.3
(-1.2)
A 		1.6
(-0.3)
A 		1.4
(-0.9)
A 		0.7
(-3)
A 		2.7
(3)
A 		1.4
(-0.9)
A 		2
C 3.5
(-1.2)
A 		9
(3)
A 		1.2
(-3)
A 		8.6
(2.7)
A 		1.9
(-2.5)
A 		4.7
(-0.3)
A 		8
avr 2.3
(-1.6) 		3.8
(0.1) 		1.1
(-3) 		6.4
(3) 		2.1
(-1.9) 		2.4
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3514
Sequence Type Exemplar sequence
Representative Public ID Y48B6A.15 NCBI
Target Description Y48B6A.15 /REP_DB=WormBase Gene ID /WP=CE22131 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U2A5 protein_id:CAB54443.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064561
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022983 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14198339:14200542:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14198335-14200546(+) 94.21 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26999 hypothetical protein Y48B6A.15 - Caenorhabditis elegans 1.0E-113
blast CAB54444 Hypothetical protein Y48B6A.7 [Caenorhabditis elegans] ref|NP_496962.1| Y48B6A.7 [Caenorhabditis elegans] gb|AAC14017.1| acetylcholinesterase [Caenorhabditis elegans] 2.0E-91
blast AAF80378 acetylcholinesterase [Caenorhabditis briggsae] sp|Q9NDG8|ACE4_CAEBR Acetylcholinesterase 4 precursor (AChE 4) 5.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.6E-84
Sequence
Target Sequence 
>C. ELEGANS:187855_AT
gggtcctattattatgctttttctcactctcaccacacaaatattcacaccctcacacac
acacatacacacgcatattcacgaaagtgcacatcgacatgcgaaacatttgtccacaca
gagaaacttgctctttttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTCCTATTATTATGCTTTTTCTC 408 497 669 Antisense
ATTATTATGCTTTTTCTCACTCTCA 88 15 676 Antisense
CACTCTCACCACACAAATATTCACA 80 199 693 Antisense
TCTCACCACACAAATATTCACACCC 218 611 696 Antisense
ACACACATACACACGCATATTCACG 1 111 727 Antisense
CACACGCATATTCACGAAAGTGCAC 356 195 736 Antisense
GAAAGTGCACATCGACATGCGAAAC 79 361 751 Antisense
ACATGCGAAACATTTGTCCACACAG 373 107 765 Antisense
GCGAAACATTTGTCCACACAGAGAA 189 289 769 Antisense
GTCCACACAGAGAAACTTGCTCTTT 486 477 780 Antisense
CACAGAGAAACTTGCTCTTTTTTTG 704 195 785 Antisense
Sequence Source Affymetrix Proprietary Database