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[187854_s_at]

Description F39C12.2 /REP_DB=WormBase Gene ID /WP=CE10094 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44581 protein_id:AAB94195.1
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_high_8_8 > 41      6grp_highest_nonorm > 70      6grp_total > 23      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 446.6
(3)
P 		331.2
(0.6)
P 		182.3
(-2.6)
P 		163.7
(-3)
M 		283
B 386
(3)
P 		276.4
(0.1)
P 		168.4
(-2.8)
P 		160.5
(-3)
P 		226
C 386.7
(3)
P 		213.9
(-2)
P 		277.6
(-0.2)
P 		181.1
(-3)
P 		206
avr 406.4
(3) 		273.8
(-0.3) 		209.4
(-2) 		168.4
(-3) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 572.8
(3)
P 		451
(1.1)
P 		347
(-0.5)
P 		268.6
(-1.7)
P 		204.7
(-2.7)
P 		183.5
(-3)
P 		389
B 452.3
(3)
P 		420.9
(2.4)
P 		381.9
(1.6)
P 		358.6
(1.2)
P 		159.6
(-2.6)
P 		140.2
(-3)
P 		312
C 354.2
(2)
P 		368.5
(2.4)
P 		392.5
(3)
P 		380.1
(2.7)
P 		196.3
(-2.1)
P 		162.2
(-3)
P 		230
avr 459.8
(3) 		413.5
(2.1) 		373.8
(1.3) 		335.8
(0.5) 		186.9
(-2.5) 		162
(-3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 162.6
(3)
P 		71.9
(-0.9)
P 		47.7
(-2)
P 		24
(-3)
M 		139
B 123.1
(3)
P 		68.3
(-0.7)
P 		39
(-2.7)
P 		34.2
(-3)
P 		89
C 128
(3)
P 		61.5
(-1.1)
P 		96.7
(1.1)
P 		30.5
(-3)
P 		98
avr 137.9
(3) 		67.2
(-0.9) 		61.1
(-1.3) 		29.6
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 105.6
(0.2)
P 		160.4
(3)
P 		75.6
(-1.4)
P 		68.1
(-1.8)
P 		61.8
(-2.1)
P 		44.7
(-3)
P 		116
B 157.4
(3)
P 		140.1
(2)
P 		92.7
(-0.7)
P 		95
(-0.6)
P 		64.9
(-2.3)
P 		52.3
(-3)
P 		105
C 131.3
(3)
P 		112.4
(1.5)
P 		99.9
(0.6)
P 		76.4
(-1.3)
P 		63.5
(-2.3)
P 		54.3
(-3)
P 		77
avr 131.4
(2.6) 		137.6
(3) 		89.4
(-0.3) 		79.8
(-1) 		63.4
(-2.1) 		50.4
(-3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187854_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16961
Sequence Type Exemplar sequence
Representative Public ID F39C12.2 NCBI
Target Description F39C12.2 /REP_DB=WormBase Gene ID /WP=CE10094 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44581 protein_id:AAB94195.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029469(11), NM_001029468(11), NM_001029472(11), NM_001029470(11), NM_001029471(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029469 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
NM_001029468 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
NM_001029472 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
NM_001029470 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
NM_001029471 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 9/11 None
GENEFINDER00000037677 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4854364:4860004:-1 10/11 None
SNAP00000037642 ENSEMBL cdna:SNAP chromosome:CEL140:X:4855088:4860004:-1 11/11 None
F39C12.2b ENSEMBL cdna:known chromosome:CEL140:X:4854045:4860004:-1 gene:F39C12.2 11/11 A 
F39C12.2a ENSEMBL cdna:known chromosome:CEL140:X:4854048:4860004:-1 gene:F39C12.2 11/11 A 
F39C12.2e ENSEMBL cdna:known chromosome:CEL140:X:4854051:4860010:-1 gene:F39C12.2 11/11 A 
F39C12.2c ENSEMBL cdna:known chromosome:CEL140:X:4854052:4860004:-1 gene:F39C12.2 11/11 A 
F39C12.2d ENSEMBL cdna:known chromosome:CEL140:X:4854371:4860004:-1 gene:F39C12.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4854221-4860254(-) 96.84 100.0
Public Domain and Genome References
Ensembl F39C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70639 Adducin protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024640.1| ADDucin family member (add-1) [Caenorhabditis elegans] sp|Q9U9K0|ADD1_CAEEL Adducin-related protein 0.0
blast AAD49856 adducin-related protein [Caenorhabditis elegans] 0.0
blast AAP82653 Adducin protein 1, isoform e [Caenorhabditis elegans] ref|NP_001024643.1| ADDucin family member (add-1) [Caenorhabditis elegans] 0.0
blast AAK70638 Adducin protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024639.1| ADDucin family member (add-1) [Caenorhabditis elegans] 0.0
blast AAD49857 adducin-related protein [Caenorhabditis elegans] 0.0
blast AAL32219 Adducin protein 1, isoform c [Caenorhabditis elegans] ref|NP_001024641.1| ADDucin family member (add-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001303 EMBL-EBI Class II aldolase/adducin, N-terminal 5.8E-68
Pfam IPR001303 EMBL-EBI Class II aldolase/adducin, N-terminal 1.6E-61
Pfam IPR001303 EMBL-EBI Class II aldolase/adducin, N-terminal 1.4E-7
Sequence
Target Sequence 
>C. ELEGANS:187854_S_AT
tcatcaattcagtcctgcgtcttcaaatcctaaagaatttaaagaaaaacaaaaagctat
caaagaaaacaacagactgggaactctttctgctggaccacaaagccagattttggacag
tgtgacatatgaagacattgcactattgattaaacctgataatgacggaacagtcggaca
gagctcgaccgctgaccgagcaatacttatcggaactgccagcaagggaatcattgatag
gcaatttcagcatcatgctcaggtgtaccaccaaatctatgcgccgaatccattctctgt
agaaactgatgcagacatcaagaaatatgtagacatggtgaaggccaagaactcgcaaag
cgctcctgtctcagcgagaagtggttactctcaatacgatgaggttgaagctgatacagt
ttccttaatgcaaggagtacgagaacataaactttctcaagcggctctgagcgcatctga
cgacggcctgaatgccggaatctccccgaataatgtccgaacttccgaagaaagcgtcaa
tacgtcgtacatgagccagtcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCAATTCAGTCCTGCGTCTTCA 161 621 1923 Antisense
AACTCTTTCTGCTGGACCACAAAGC 210 139 2004 Antisense
AACAGTCGGACAGAGCTCGACCGCT 411 135 2091 Antisense
TCGACCGCTGACCGAGCAATACTTA 45 603 2107 Antisense
TCAGCATCATGCTCAGGTGTACCAC 661 621 2169 Antisense
AAATCTATGCGCCGAATCCATTCTC 44 119 2195 Antisense
CAAGAACTCGCAAAGCGCTCCTGTC 424 185 2268 Antisense
TCAAGCGGCTCTGAGCGCATCTGAC 408 631 2379 Antisense
GACGGCCTGAATGCCGGAATCTCCC 43 377 2404 Antisense
GAATCTCCCCGAATAATGTCCGAAC 286 327 2420 Antisense
AATACGTCGTACATGAGCCAGTCAG 173 171 2461 Antisense
Sequence Source Affymetrix Proprietary Database