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[187850_s_at]

Description F55C12.5 /REP_DB=WormBase Gene ID /WP=CE02774 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20810 protein_id:AAC71164.1
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 78      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 84      6grp_total > 59      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 517
1 2 3 4 range
A 595.3
(1.8)
P 		304
(-2.5)
P 		270.8
(-3)
P 		679.7
(3)
P 		409
B 757
(3)
P 		285.3
(-2.5)
P 		240
(-3)
P 		739.5
(2.8)
P 		517
C 687
(2.4)
P 		337
(-3)
P 		348
(-2.8)
P 		725.9
(3)
P 		389
avr 679.8
(2.5) 		308.8
(-2.7) 		286.3
(-3) 		715
(3) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 597.4
(-0.1)
P 		532
(-1.1)
P 		405.9
(-3)
P 		715.3
(1.7)
P 		559.8
(-0.7)
P 		801
(3)
P 		395
B 594.3
(0.2)
P 		478.1
(-3)
P 		503.3
(-2.3)
P 		580.5
(-0.1)
P 		599.8
(0.4)
P 		692.9
(3)
P 		215
C 722.5
(3)
P 		532.1
(-3)
P 		596
(-1)
P 		695.4
(2.1)
P 		639.1
(0.4)
P 		716
(2.8)
P 		190
avr 638.1
(0.5) 		514.1
(-2.7) 		501.7
(-3) 		663.7
(1.1) 		599.6
(-0.5) 		736.6
(3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 216.8
(3)
P 		66
(-3)
P 		70.8
(-2.8)
P 		99.5
(-1.7)
P 		151
B 241.4
(3)
P 		70.5
(-2.5)
P 		55.6
(-3)
P 		157.6
(0.3)
P 		186
C 227.4
(3)
P 		96.9
(-3)
P 		121.3
(-1.9)
P 		122.4
(-1.8)
P 		131
avr 228.5
(3) 		77.8
(-3) 		82.6
(-2.8) 		126.5
(-1.1) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 110.1
(-1.8)
P 		189.2
(2.7)
P 		88.4
(-3)
P 		181.4
(2.2)
P 		168.9
(1.5)
P 		195
(3)
P 		107
B 206.8
(0.7)
P 		159.1
(-1.4)
P 		122.2
(-3)
P 		153.8
(-1.6)
P 		243.7
(2.4)
P 		258.4
(3)
P 		136
C 267.8
(3)
P 		162.4
(-1.9)
P 		151.7
(-2.4)
P 		139.8
(-3)
P 		206.8
(0.1)
P 		239.7
(1.7)
P 		128
avr 194.9
(1) 		170.2
(-0.3) 		120.8
(-3) 		158.3
(-1) 		206.5
(1.7) 		231
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187850_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5931
Sequence Type Exemplar sequence
Representative Public ID F55C12.5 NCBI
Target Description F55C12.5 /REP_DB=WormBase Gene ID /WP=CE02774 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20810 protein_id:AAC71164.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062770(11), NM_182235(11), NM_062771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062770 NCBI Caenorhabditis elegans F55C12.5b (F55C12.5) mRNA, complete cds. 11/11 None
NM_182235 NCBI Caenorhabditis elegans F55C12.5c (F55C12.5) mRNA, complete cds. 11/11 None
NM_062771 NCBI Caenorhabditis elegans F55C12.5a (F55C12.5) mRNA, complete cds. 11/11 None
SNAP00000011032 ENSEMBL cdna:SNAP chromosome:CEL140:II:5867637:5870872:-1 11/11 None
GENEFINDER00000011041 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5867637:5873527:-1 11/11 None
F55C12.5b ENSEMBL cdna:known chromosome:CEL140:II:5867219:5873527:-1 gene:F55C12.5 11/11 A 
F55C12.5c ENSEMBL cdna:known chromosome:CEL140:II:5867232:5873578:-1 gene:F55C12.5 11/11 None
F55C12.5a ENSEMBL cdna:known chromosome:CEL140:II:5867637:5871915:-1 gene:F55C12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5867633-5870817(-) 99.37 99.37
Public Domain and Genome References
Ensembl F55C12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73879 Hypothetical protein F55C12.5b [Caenorhabditis elegans] ref|NP_495171.1| F55C12.5b [Caenorhabditis elegans] 0.0
blast T34308 hypothetical protein F55C12.5 - Caenorhabditis elegans 0.0
blast AAK73878 Hypothetical protein F55C12.5a [Caenorhabditis elegans] ref|NP_495172.1| F55C12.5a [Caenorhabditis elegans] 0.0
blast AAN39671 Hypothetical protein F55C12.5c [Caenorhabditis elegans] ref|NP_872035.1| F55C12.5c [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495171.1 1 225-247
NP_872035.1 1 225-247
NP_495172.1 1 176-198
F55C12.5b 1 225-247
F55C12.5c 1 225-247
F55C12.5a 1 176-198
SNAP00000011032 1 164-186
GENEFINDER00000011041 1 225-247
Sequence
Target Sequence 
>C. ELEGANS:187850_S_AT
gtggaatccgattggttctgcagaccagtatcaatttgttgaaacttcaaagtggctcac
accaagtgaaaacagagaaacgagtaaatcgatggactgaatcagtgagagtcacacgat
actctgattctgatctaccggaaagccctgaaagcagtcctgatgaggactttggagcga
aaaacaattcagaagggacaacaaaggaaaaaactggaaagaaaatcctatcaatcgtcg
aacgagcggcacaaagttcactattccagaaggcagccaaattacaggctgtcgcgaggc
tgattgaggacgtttcaacgacaccattgatgttgaatgttgaagttgaagaggtagagg
gaccaatgacttgtaatattccaccaccaccaagtgatcgattatggtatgcattccgtc
gtcgcccaattctcaaactccgtgcagttccacaagtcggcgatcgatctgtggatcttt
caactgttagtgaatggattgaaacaaaactccgtcaagttctggaaaagaatctcgtgt
gtcctaatatggatgatataattctccccgttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAATCCGATTGGTTCTGCAGAC 283 491 2087 Antisense
GATACTCTGATTCTGATCTACCGGA 340 423 2204 Antisense
GGAAAGCCCTGAAAGCAGTCCTGAT 115 527 2226 Antisense
GAGCGGCACAAAGTTCACTATTCCA 479 385 2330 Antisense
TACAGGCTGTCGCGAGGCTGATTGA 643 643 2369 Antisense
AATGACTTGTAATATTCCACCACCA 498 163 2451 Antisense
GATTATGGTATGCATTCCGTCGTCG 278 427 2486 Antisense
CAATTCTCAAACTCCGTGCAGTTCC 81 179 2513 Antisense
GTTCCACAAGTCGGCGATCGATCTG 573 439 2533 Antisense
AAGAATCTCGTGTGTCCTAATATGG 140 153 2614 Antisense
GGATGATATAATTCTCCCCGTTCTC 421 513 2637 Antisense
Sequence Source Affymetrix Proprietary Database