[Home] | [Total List]

[187848_s_at]

Description W10G11.8 /REP_DB=WormBase Gene ID /WP=CE24048 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44907 protein_id:AAG24225.1
Cluster 6grp_total > 75      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 32.5
(-1.7)
A 		34.9
(-1.4)
A 		22.6
(-3)
A 		68.6
(3)
A 		46
B 42.9
(0.8)
M 		49.8
(3)
A 		40.3
(-0.1)
A 		31.3
(-3)
A 		19
C 20.8
(-1.9)
A 		30.4
(-1.4)
P 		0.9
(-3)
A 		113.1
(3)
P 		112
avr 32.1
(-1.7) 		38.4
(-0.9) 		21.3
(-3) 		71
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 36.2
(2.1)
A 		5
(-3)
A 		35.6
(2)
A 		29.8
(1)
A 		5.5
(-2.9)
A 		42
(3)
A 		37
B 8
(-0.8)
A 		3.1
(-3)
A 		11.4
(0.8)
A 		8.1
(-0.7)
A 		16.2
(3)
P 		8.6
(-0.5)
A 		13
C 3.5
(-3)
A 		43.8
(1.4)
A 		24.3
(-0.7)
A 		53.2
(2.4)
A 		22
(-1)
A 		58.3
(3)
A 		55
avr 15.9
(-2.6) 		17.3
(-2.3) 		23.8
(-0.5) 		30.4
(1.4) 		14.6
(-3) 		36.3
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.9
(3)
A 		7.6
(-1.3)
A 		5.9
(-3)
A 		10
(1.1)
A 		6
B 13.7
(3)
M 		12.3
(1.8)
A 		9.3
(-0.8)
A 		6.7
(-3)
A 		7
C 6.9
(-0.9)
A 		8.7
(-0.3)
P 		0.3
(-3)
A 		19.1
(3)
P 		19
avr 10.8
(2) 		9.5
(0.9) 		5.2
(-3) 		11.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.7
(0.5)
A 		1.8
(-2.9)
A 		7.8
(1.3)
A 		7.5
(1.1)
A 		1.7
(-3)
A 		10.2
(3)
A 		9
B 2.8
(-1.1)
A 		1
(-3)
A 		2.8
(-1.1)
A 		2.1
(-1.8)
A 		6.6
(3)
P 		3.2
(-0.6)
A 		6
C 1.3
(-3)
A 		13.4
(1)
A 		6.2
(-1.4)
A 		10.7
(0.1)
A 		7.1
(-1.1)
A 		19.5
(3)
A 		18
avr 3.6
(-3) 		5.4
(-1.5) 		5.6
(-1.4) 		6.8
(-0.4) 		5.1
(-1.8) 		11
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187848_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5965
Sequence Type Exemplar sequence
Representative Public ID W10G11.8 NCBI
Target Description W10G11.8 /REP_DB=WormBase Gene ID /WP=CE24048 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44907 protein_id:AAG24225.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y49F6A.6 ENSEMBL cdna:pseudogene chromosome:CEL140:II:3593817:3595160:-1 gene:Y49F6A.6 None
W10G11.8 ENSEMBL cdna:pseudogene chromosome:CEL140:II:3586483:3587943:1 gene:W10G11.8 None
Y49F6A.6 ENSEMBL cdna:pseudogene chromosome:CEL140:II:3593817:3595160:-1 gene:Y49F6A.6 None
W10G11.8 ENSEMBL cdna:pseudogene chromosome:CEL140:II:3586483:3587943:1 gene:W10G11.8 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3586481-3587942(+) 100.0 100.0
chrII:3593815-3595161(-) 87.95 87.95
Public Domain and Genome References
Ensembl W10G11.8
Y49F6A.6
Sequence
Target Sequence 
>C. ELEGANS:187848_S_AT
ggggtcagtattctgtgatgatgctcggtgtgagcttcatcatcttgtatgaaaaccggc
agagtcaaatttcaacggtgaaacttaaaattgagagaaaacaaactcgtatactatatt
ttgcgtttaaatgtttattttcgtttgttatattgcttccattctatataaataacacgg
atcagatggagttgaggaaaaccgtgttaaaggtatatttagtggtgagcaataggcttc
cgattggtcactttttcattattaccacatattttcaattcaacaaatcccgtgtcccac
gatcgaattttttgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTCAGTATTCTGTGATGATGCT 490 495 338 Antisense
AACTCGTATACTATATTTTGCGTTT 516 141 441 Antisense
ATGTTTATTTTCGTTTGTTATATTG 594 47 468 Antisense
ATAACACGGATCAGATGGAGTTGAG 268 23 509 Antisense
AGTGGTGAGCAATAGGCTTCCGATT 298 59 558 Antisense
ATAGGCTTCCGATTGGTCACTTTTT 612 21 569 Antisense
GTCACTTTTTCATTATTACCACATA 349 465 584 Antisense
TATTACCACATATTTTCAATTCAAC 224 663 597 Antisense
TTCAATTCAACAAATCCCGTGTCCC 539 683 611 Antisense
ATCCCGTGTCCCACGATCGAATTTT 312 37 624 Antisense
GTCCCACGATCGAATTTTTTGACTC 58 475 631 Antisense
Sequence Source Affymetrix Proprietary Database