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[187846_at]

Description W03F11.5 /REP_DB=WormBase Gene ID /WP=CE14550 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01781 protein_id:AAB54151.1
Cluster 6grp_total > 02      4grp_total > 60      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 193.4
(3)
A 		175.7
(2.1)
A 		186.6
(2.7)
M 		71.4
(-3)
A 		122
B 150
(2.2)
A 		165.4
(3)
A 		158.6
(2.6)
A 		52.7
(-3)
A 		113
C 134.2
(-1.1)
A 		165.1
(0.6)
A 		209
(3)
M 		98.9
(-3)
A 		110
avr 159.2
(1.6) 		168.7
(2.1) 		184.7
(3) 		74.3
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 199.8
(0.4)
A 		272.2
(3)
P 		138.7
(-1.8)
P 		234
(1.6)
P 		193.9
(0.2)
P 		106
(-3)
A 		166
B 170.9
(-0.1)
P 		213.5
(2.5)
P 		158.1
(-0.8)
P 		222.6
(3)
P 		191.4
(1.2)
P 		121.1
(-3)
A 		102
C 135.5
(-1.2)
A 		225.9
(2.6)
P 		235.9
(3)
P 		190.9
(1.1)
P 		190.2
(1.1)
P 		93.2
(-3)
A 		143
avr 168.7
(-0.2) 		237.2
(3) 		177.6
(0.3) 		215.8
(2) 		191.8
(0.9) 		106.8
(-3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 70.4
(3)
A 		38.1
(-0.2)
A 		48.8
(0.8)
M 		10.4
(-3)
A 		60
B 47.8
(3)
A 		40.9
(1.9)
A 		36.8
(1.2)
A 		11.2
(-3)
A 		37
C 44.4
(-0)
A 		47.5
(0.3)
A 		72.8
(3)
M 		16.7
(-3)
A 		56
avr 54.2
(3) 		42.2
(1.3) 		52.8
(2.8) 		12.8
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 36.8
(-2.1)
A 		96.8
(3)
P 		30.2
(-2.6)
P 		59.3
(-0.2)
P 		58.5
(-0.2)
P 		25.8
(-3)
A 		71
B 59.4
(0.2)
P 		71.1
(2)
P 		38.4
(-3)
P 		59
(0.1)
P 		77.8
(3)
P 		45.2
(-2)
A 		39
C 50.2
(0)
A 		68.9
(3)
P 		60
(1.6)
P 		38.4
(-1.9)
P 		61.5
(1.8)
P 		31.2
(-3)
A 		38
avr 48.8
(-1) 		78.9
(3) 		42.9
(-1.8) 		52.2
(-0.6) 		65.9
(1.3) 		34.1
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.83
Sequence Type Exemplar sequence
Representative Public ID W03F11.5 NCBI
Target Description W03F11.5 /REP_DB=WormBase Gene ID /WP=CE14550 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01781 protein_id:AAB54151.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026486 NCBI Caenorhabditis elegans W03F11.5 (W03F11.5) mRNA, complete cds. 11/11 None
SNAP00000024822 ENSEMBL cdna:SNAP chromosome:CEL140:I:2214231:2219418:1 10/11 None
W03F11.5a ENSEMBL cdna:known chromosome:CEL140:I:2211632:2219418:1 gene:W03F11.5 11/11 None
W03F11.5b ENSEMBL cdna:known chromosome:CEL140:I:2216101:2219418:1 gene:W03F11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024831 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024828 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2211337-2219418(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03F11.5
Entrez Gene 171777 Entrez gene
WormBase CE39037 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18988 Hypothetical protein W03F11.5a [Caenorhabditis elegans] 1.0E-141
blast AAK18991 Hypothetical protein W03F11.5b [Caenorhabditis elegans] ref|NP_001021657.1| W03F11.5 [Caenorhabditis elegans] 1.0E-113
blast AAK18988 Hypothetical protein W03F11.5a [Caenorhabditis elegans] 1.0E-109
blast AAK18991 Hypothetical protein W03F11.5b [Caenorhabditis elegans] ref|NP_001021657.1| W03F11.5 [Caenorhabditis elegans] 1.0E-108
blast AAK18988 Hypothetical protein W03F11.5a [Caenorhabditis elegans] 1.0E-106
blast AAK18991 Hypothetical protein W03F11.5b [Caenorhabditis elegans] ref|NP_001021657.1| W03F11.5 [Caenorhabditis elegans] 1.0E-106
blast CAE60306 Hypothetical protein CBG03895 [Caenorhabditis briggsae] 1.0E-64
blast CAE60306 Hypothetical protein CBG03895 [Caenorhabditis briggsae] 7.0E-64
Sequence
Target Sequence 
>C. ELEGANS:187846_AT
gatccaatcagattagcctccgacctaatgtcatccgcaatgaaagttgacacaaaacga
aagacactggcgggaattcaaatgccattttcactaacgggaaggcctatgaacttacag
attgatggagaatctcatgatgccgttagtttagtagatgatcctaagaagaggaacaat
gagaagagcatggaagttaggaggtccgacatgactccagactcgcggcgagcattttta
cgggctcgtcaggtatgcctcgagcagtctgcagattcttgtgacgaggcattagacaca
ttccatcgcgtacggtacgggaaatcattgctcggtggggaggaggacggagagagtgag
caatatcggagcattatcgaacgaaggctcaaggagacgtcacattccacatcatcacca
ccaggaacttctgatccatatacggattccggatcccatgaagaatcggatgaaatagag
gagaatctggagccgctttccagaaaacccacgtcatcaggccgcttctcccatatcaca
ttaccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCAATCAGATTAGCCTCCGACC 300 415 535 Antisense
TCCGACCTAATGTCATCCGCAATGA 78 595 553 Antisense
AGGAGGTCCGACATGACTCCAGACT 341 57 733 Antisense
TTACGGGCTCGTCAGGTATGCCTCG 523 609 772 Antisense
GACGAGGCATTAGACACATTCCATC 313 379 817 Antisense
ACATTCCATCGCGTACGGTACGGGA 382 103 832 Antisense
GGTACGGGAAATCATTGCTCGGTGG 566 397 848 Antisense
AAGGAGACGTCACATTCCACATCAT 309 161 925 Antisense
TCACCACCAGGAACTTCTGATCCAT 635 625 949 Antisense
TGGAGCCGCTTTCCAGAAAACCCAC 314 547 1022 Antisense
CTTCTCCCATATCACATTACCAAAA 159 221 1059 Antisense
Sequence Source Affymetrix Proprietary Database