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[187844_at]

Description C44E12.2 /REP_DB=WormBase Gene ID /WP=CE02549 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18621 protein_id:AAA80375.1
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_high_8_8 > 37      6grp_highest_nonorm > 52      6grp_total > 51      4grp_total > 34      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 240.3
(-3)
P 		483.1
(3)
P 		252.8
(-2.7)
P 		291.7
(-1.7)
P 		243
B 234.1
(-3)
P 		477.6
(1.8)
P 		340.2
(-0.9)
P 		539.5
(3)
A 		305
C 246.8
(-3)
P 		351.1
(3)
P 		246.4
(-3)
P 		248.2
(-2.9)
P 		105
avr 240.4
(-3) 		437.3
(3) 		279.8
(-1.8) 		359.8
(0.6) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1251
1 2 3 4 5 6 range
A 371.7
(-2.4)
P 		1012.9
(1.5)
P 		809.6
(0.3)
P 		1260.5
(3)
P 		392.7
(-2.2)
P 		268.5
(-3)
P 		992
B 680.4
(2.8)
P 		686.1
(3)
P 		645.5
(1.8)
P 		589.3
(0.1)
P 		613.6
(0.8)
P 		483.8
(-3)
P 		202
C 702.8
(-1.5)
P 		429.1
(-3)
P 		1519.1
(3)
P 		701.3
(-1.5)
P 		703.9
(-1.5)
P 		510.2
(-2.6)
P 		1090
avr 585
(-1.3) 		709.4
(0) 		991.4
(3) 		850.4
(1.5) 		570.1
(-1.4) 		420.8
(-3) 		571
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 87.5
(1.3)
P 		104.9
(3)
P 		66.1
(-0.7)
P 		42.7
(-3)
P 		62
B 74.6
(-3)
P 		117.9
(3)
P 		78.8
(-2.4)
P 		115
(2.6)
A 		43
C 81.7
(1.1)
P 		100.9
(3)
P 		85.9
(1.5)
P 		41.8
(-3)
P 		59
avr 81.3
(-0.9) 		107.9
(3) 		76.9
(-1.5) 		66.5
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 68.5
(-2.9)
P 		360.2
(3)
P 		176.3
(-0.7)
P 		319.7
(2.2)
P 		118.5
(-1.9)
P 		65.4
(-3)
P 		295
B 236.7
(2.2)
P 		228.4
(1.7)
P 		156.7
(-3)
P 		156.1
(-3)
P 		249.3
(3)
P 		180.4
(-1.4)
P 		93
C 260.5
(0)
P 		130.9
(-3)
P 		386.6
(3)
P 		141
(-2.8)
P 		227.8
(-0.7)
P 		170.8
(-2.1)
P 		256
avr 188.6
(-0) 		239.8
(3) 		239.9
(3) 		205.6
(1) 		198.5
(0.5) 		138.9
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17101
Sequence Type Exemplar sequence
Representative Public ID C44E12.2 NCBI
Target Description C44E12.2 /REP_DB=WormBase Gene ID /WP=CE02549 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18621 protein_id:AAA80375.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076886
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076886 NCBI Caenorhabditis elegans C44E12.1 (C44E12.1) mRNA, complete cds. A 
SNAP00000016788 ENSEMBL cdna:SNAP chromosome:CEL140:X:7596900:7599723:1 None
C44E12.1 ENSEMBL cdna:known chromosome:CEL140:X:7596869:7599750:1 gene:C44E12.1 A 
GENEFINDER00000016792 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7596900:7599723:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7596898-7598183(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44E12.1
Entrez Gene 181023 Entrez gene
SwissProt Q18621 EMBL-EBI
WormBase CE27852 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80375 Hypothetical protein C44E12.1 [Caenorhabditis elegans] ref|NP_509287.1| C44E12.1 [Caenorhabditis elegans] 0.0
blast CAE70247 Hypothetical protein CBG16737 [Caenorhabditis briggsae] 1.0E-176
blast EAA71683 hypothetical protein FG03481.1 [Gibberella zeae PH-1] ref|XP_383657.1| hypothetical protein FG03481.1 [Gibberella zeae PH-1] 1.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002933 EMBL-EBI Peptidase M20 8.7E-60
Sequence
Target Sequence 
>C. ELEGANS:187844_AT
ttgagtacatgagccactcgtccactacgggaaatgaagctgcatttgctgatgttgttg
caaaagatcttgaagagaacggatggacagtgtataaacagagcattcccaattcagacc
ggtacaacatttatgcaacatttcggaattctgacccaaaacatgtcaaagtgctactaa
acactcacttggacacagttcctccgtactttccaccaacccaggacgaacagaacattt
atggaaacgggtcgaacgatgctaaaggttttattcagacgcttcactttttttcttgtg
tcttaccggaaatgaccttcggtcacttgattcttgttcccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGTACATGAGCCACTCGTCCAC 148 707 53 Antisense
CCACTCGTCCACTACGGGAAATGAA 44 273 66 Antisense
AAACAGAGCATTCCCAATTCAGACC 646 127 148 Antisense
CAGACCGGTACAACATTTATGCAAC 364 205 167 Antisense
GCAACATTTCGGAATTCTGACCCAA 228 319 187 Antisense
AACACTCACTTGGACACAGTTCCTC 558 135 232 Antisense
TTTCCACCAACCCAGGACGAACAGA 26 661 262 Antisense
AGGTTTTATTCAGACGCTTCACTTT 134 53 318 Antisense
TCACTTTTTTTCTTGTGTCTTACCG 470 625 336 Antisense
GTGTCTTACCGGAAATGACCTTCGG 23 487 350 Antisense
CGGTCACTTGATTCTTGTTCCCAAG 30 245 372 Antisense
Sequence Source Affymetrix Proprietary Database