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[187842_s_at]

Description F43E2.10 /REP_DB=WormBase Gene ID /WP=CE10352 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O02090 protein_id:AAC71127.1
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 4.6
(-2.4)
A 		1.5
(-3)
A 		3.5
(-2.6)
A 		32
(3)
A 		31
B 5.9
(3)
A 		4.3
(0.8)
A 		1.5
(-3)
A 		5.3
(2.2)
A 		4
C 3.1
(-3)
A 		28.9
(-0.8)
A 		3.1
(-3)
A 		73.9
(3)
A 		71
avr 4.5
(-2.7) 		11.6
(-1.4) 		2.7
(-3) 		37.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 1.1
(-3)
A 		4.9
(-2.7)
A 		4.5
(-2.7)
A 		18.8
(-1.5)
A 		36.4
(-0.1)
A 		73.1
(3)
A 		72
B 31.2
(1.4)
A 		17.5
(-0.8)
A 		6.3
(-2.6)
A 		3.6
(-3)
A 		41.4
(3)
A 		40.6
(2.9)
P 		38
C 2.8
(-3)
A 		6.2
(-2.5)
A 		8.2
(-2.2)
A 		2.6
(-3)
A 		25.9
(0.1)
A 		47.1
(3)
P 		45
avr 11.7
(-2.3) 		9.5
(-2.6) 		6.3
(-3) 		8.3
(-2.7) 		34.6
(0.6) 		53.6
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.7
(-1.1)
A 		0.3
(-3)
A 		0.9
(-2.2)
A 		4.7
(3)
A 		4
B 1.9
(3)
A 		1.1
(-0.2)
A 		0.4
(-3)
A 		1.1
(-0.2)
A 		2
C 1
(-3)
A 		8.3
(0.8)
A 		1.1
(-2.9)
A 		12.5
(3)
A 		12
avr 1.5
(-2.2) 		3.2
(-0.3) 		0.8
(-3) 		6.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.2
(-3)
A 		1.7
(-2.5)
A 		1
(-2.7)
A 		4.8
(-1.4)
A 		11
(0.7)
A 		17.8
(3)
A 		18
B 10.8
(0.7)
A 		5.8
(-1.2)
A 		1.5
(-2.8)
A 		1
(-3)
A 		16.8
(3)
A 		15.1
(2.4)
P 		16
C 1
(-2.8)
A 		1.9
(-2.5)
A 		2.1
(-2.4)
A 		0.5
(-3)
A 		8.4
(0.1)
A 		15.8
(3)
P 		15
avr 4
(-2) 		3.1
(-2.3) 		1.5
(-3) 		2.1
(-2.8) 		12.1
(1.3) 		16.2
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187842_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5091
Sequence Type Exemplar sequence
Representative Public ID F43E2.10 NCBI
Target Description F43E2.10 /REP_DB=WormBase Gene ID /WP=CE10352 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O02090 protein_id:AAC71127.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000044493 ENSEMBL cdna:SNAP chromosome:CEL140:II:7366426:7366959:-1 11/11 None
GENEFINDER00000044503 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7366426:7370224:-1 11/11 None
F43E2.6a ENSEMBL cdna:known chromosome:CEL140:II:7366446:7368774:-1 gene:F43E2.6 11/11 None
F43E2.6b.2 ENSEMBL cdna:known chromosome:CEL140:II:7366447:7368775:-1 gene:F43E2.6 11/11 None
F43E2.6b.1 ENSEMBL cdna:known chromosome:CEL140:II:7366447:7368239:-1 gene:F43E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7366422-7367119(-) 100.0 100.0
Public Domain and Genome References
Ensembl F43E2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T34042 hypothetical protein F43E2.10 - Caenorhabditis elegans 4.0E-76
blast T34043 hypothetical protein F43E2.6 - Caenorhabditis elegans 7.0E-72
blast T34042 hypothetical protein F43E2.10 - Caenorhabditis elegans 8.0E-65
blast AAN84799 Hypothetical protein F43E2.6a [Caenorhabditis elegans] ref|NP_495541.2| F43E2.6a [Caenorhabditis elegans] 2.0E-54
blast AAN84799 Hypothetical protein F43E2.6a [Caenorhabditis elegans] ref|NP_495541.2| F43E2.6a [Caenorhabditis elegans] 8.0E-53
blast AAN84800 Hypothetical protein F43E2.6b [Caenorhabditis elegans] ref|NP_495542.2| F43E2.6b [Caenorhabditis elegans] 2.0E-49
blast AAN84800 Hypothetical protein F43E2.6b [Caenorhabditis elegans] ref|NP_495542.2| F43E2.6b [Caenorhabditis elegans] 4.0E-47
blast AAN84799 Hypothetical protein F43E2.6a [Caenorhabditis elegans] ref|NP_495541.2| F43E2.6a [Caenorhabditis elegans] 4.0E-47
Sequence
Target Sequence 
>C. ELEGANS:187842_S_AT
ttgatgttttcggtttcgtttatgaagttggtggaattcttgataaagtccaggcggcta
ttgacggattgtatgaagcagtcatagtgccggattcgaactactcgatgattccagatt
cgatgaaaacgaaaattcaagttcacccggtatggcatgtacaagaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATGTTTTCGGTTTCGTTTATGA 580 705 302 Antisense
GAATTCTTGATAAAGTCCAGGCGGC 89 323 335 Antisense
AAGTCCAGGCGGCTATTGACGGATT 211 157 347 Antisense
GGCGGCTATTGACGGATTGTATGAA 323 541 354 Antisense
GAAGCAGTCATAGTGCCGGATTCGA 313 341 376 Antisense
ATAGTGCCGGATTCGAACTACTCGA 113 21 385 Antisense
CGAACTACTCGATGATTCCAGATTC 268 253 398 Antisense
TACTCGATGATTCCAGATTCGATGA 19 645 403 Antisense
GAAAATTCAAGTTCACCCGGTATGG 585 351 432 Antisense
AGTTCACCCGGTATGGCATGTACAA 672 61 441 Antisense
CCCGGTATGGCATGTACAAGAAGCT 166 261 447 Antisense
Sequence Source Affymetrix Proprietary Database