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[187841_s_at]

Description C07A12.7 /REP_DB=WormBase Gene ID /WP=CE25764 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q17769 protein_id:AAC69239.1
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 70      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 65      6grp_total > 91      4grp_total > 10      6grp_highest_sub > 04_05      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1048
1 2 3 4 range
A 806.9
(-3)
P 		1021.7
(-1.6)
P 		845.4
(-2.8)
P 		1744.8
(3)
P 		938
B 842.5
(-2.6)
P 		901.2
(-2.2)
P 		788.8
(-3)
P 		1592.2
(3)
P 		803
C 847.5
(-2.4)
P 		748.9
(-3)
P 		757.4
(-3)
P 		1797.1
(3)
P 		1048
avr 832.3
(-2.8) 		890.6
(-2.4) 		797.2
(-3) 		1711.4
(3) 		914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 653
1 2 3 4 5 6 range
A 1013.8
(0.7)
P 		1034.7
(1)
P 		719.1
(-3)
P 		1193.4
(3)
P 		1072.6
(1.5)
P 		836.6
(-1.5)
P 		474
B 1024.4
(0.1)
P 		971
(-0.4)
P 		1019.1
(0.1)
P 		1335.6
(3)
P 		1124.4
(1.1)
P 		682.9
(-3)
P 		653
C 1070.7
(2)
P 		1002.7
(0.9)
P 		979.2
(0.5)
P 		918.1
(-0.4)
P 		1137.5
(3)
P 		750.1
(-3)
P 		387
avr 1036.3
(1.3) 		1002.8
(0.8) 		905.8
(-0.7) 		1149
(3) 		1111.5
(2.4) 		756.5
(-3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 293.8
(3)
P 		221.8
(-2.9)
P 		221
(-3)
P 		255.4
(-0.2)
P 		73
B 268.7
(0.3)
P 		222.6
(-1.5)
P 		182.8
(-3)
P 		339.3
(3)
P 		157
C 280.5
(1.5)
P 		215.3
(-3)
P 		264
(0.3)
P 		303
(3)
P 		88
avr 281
(1.6) 		219.9
(-3) 		222.6
(-2.8) 		299.2
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 186.9
(-2.1)
P 		368
(3)
P 		156.6
(-3)
P 		302.7
(1.1)
P 		323.7
(1.7)
P 		203.7
(-1.7)
P 		211
B 356.4
(0.1)
P 		323.2
(-0.8)
P 		247.5
(-3)
P 		353.8
(0)
P 		456.8
(3)
P 		254.6
(-2.8)
P 		209
C 396.8
(3)
P 		306
(0.4)
P 		249.2
(-1.2)
P 		184.6
(-3)
P 		368.1
(2.2)
P 		251.1
(-1.1)
P 		212
avr 313.4
(0.5) 		332.4
(1.2) 		217.8
(-3) 		280.4
(-0.7) 		382.9
(3) 		236.5
(-2.3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187841_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16031
Sequence Type Exemplar sequence
Representative Public ID C07A12.7 NCBI
Target Description C07A12.7 /REP_DB=WormBase Gene ID /WP=CE25764 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q17769 protein_id:AAC69239.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076376(11), NM_076375(11), NM_001029198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076376 NCBI Caenorhabditis elegans C07A12.7a (C07A12.7) mRNA, complete cds. 11/11 None
NM_076375 NCBI Caenorhabditis elegans C07A12.7b (C07A12.7) mRNA, complete cds. 11/11 None
NM_001029198 NCBI Caenorhabditis elegans C07A12.7c (C07A12.7) mRNA, complete cds. 11/11 None
GENEFINDER00000032350 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4517869:4519944:-1 11/11 None
SNAP00000032344 ENSEMBL cdna:SNAP chromosome:CEL140:X:4517964:4521018:-1 11/11 None
C07A12.7a.1 ENSEMBL cdna:known chromosome:CEL140:X:4517724:4521019:-1 gene:C07A12.7 11/11 None
C07A12.7a.2 ENSEMBL cdna:known chromosome:CEL140:X:4517724:4521039:-1 gene:C07A12.7 11/11 None
C07A12.7b ENSEMBL cdna:known chromosome:CEL140:X:4517869:4521018:-1 gene:C07A12.7 11/11 None
C07A12.7c.2 ENSEMBL cdna:known chromosome:CEL140:X:4517869:4518656:-1 gene:C07A12.7 11/11 None
C07A12.7c.1 ENSEMBL cdna:known chromosome:CEL140:X:4517869:4519598:-1 gene:C07A12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4517869-4521019(-) 96.8 100.0
Public Domain and Genome References
Ensembl C07A12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39154 Hypothetical protein C07A12.7a [Caenorhabditis elegans] ref|NP_508777.1| C07A12.7a [Caenorhabditis elegans] 0.0
blast AAK39156 Hypothetical protein C07A12.7b [Caenorhabditis elegans] ref|NP_508776.1| C07A12.7b [Caenorhabditis elegans] 0.0
blast CAE68605 Hypothetical protein CBG14483 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004152 EMBL-EBI GAT domain 1.5E-27
Pfam IPR002014 EMBL-EBI VHS 5.8E-48
Pfam IPR004152 EMBL-EBI GAT domain 1.5E-27
Pfam IPR004152 EMBL-EBI GAT domain 1.8E-14
Pfam IPR004152 EMBL-EBI GAT domain 1.5E-27
Pfam IPR002014 EMBL-EBI VHS 8.9E-37
Sequence
Target Sequence 
>C. ELEGANS:187841_S_AT
gcagggacaagagccaatctccgcaacaccagcgcaattgaccaaattgcgggcagacct
tgacgtggtcaatcaaaacatcaaagtgttccgcgagacgctcaccgacgttgtgccacg
caaggagaccgccgacgagctgcaattgctatcggacctcaacgacacttgccgtcacat
gcaacaacgcgtgctggacctgatccgctacgtgagcaatgatgaagttacttatgaact
tcttatggtcaatgattcattgaacagtgtttttgaaaaatatgatcgttttgtgtcaaa
ccgcgacggggaaaagcaagccgccgaagctcgtgatctaattgatatgggtgacggaaa
aagtttgggtgaccaattatcagccctcaaggtaactgctgccagcggagagccatcaag
cagcgcctcaacctctcaggatgcttacaaggcaaacgctgagccacaaaccgacgttgg
acttgcagccgctgtgagcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGGACAAGAGCCAATCTCCGCA 12 311 726 Antisense
ACATCAAAGTGTTCCGCGAGACGCT 639 103 803 Antisense
CCGACGTTGTGCCACGCAAGGAGAC 20 265 830 Antisense
CGCCGACGAGCTGCAATTGCTATCG 222 255 855 Antisense
ATTGCTATCGGACCTCAACGACACT 634 1 870 Antisense
ACATGCAACAACGCGTGCTGGACCT 26 107 902 Antisense
TTTGGGTGACCAATTATCAGCCCTC 244 665 1089 Antisense
AGCGGAGAGCCATCAAGCAGCGCCT 457 81 1129 Antisense
CCTCAACCTCTCAGGATGCTTACAA 203 269 1151 Antisense
GCCACAAACCGACGTTGGACTTGCA 422 275 1188 Antisense
GGACTTGCAGCCGCTGTGAGCAACA 112 525 1204 Antisense
Sequence Source Affymetrix Proprietary Database