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[187840_s_at]

Description ZK1127.9 /REP_DB=WormBase Gene ID /WP=CE07647 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q23399 protein_id:AAB93431.1
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 41      6grp_total > 36      4grp_total > 47      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 953.6
(3)
P 		375.7
(-3)
P 		433.8
(-2.4)
P 		501
(-1.7)
P 		578
B 884.2
(3)
P 		438.5
(-2.6)
P 		408.7
(-3)
P 		507.9
(-1.7)
P 		476
C 1020.9
(3)
P 		505.2
(-2.9)
P 		555.1
(-2.4)
P 		499.1
(-3)
P 		522
avr 952.9
(3) 		439.8
(-3) 		465.9
(-2.7) 		502.7
(-2.3) 		513

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 575.4
(-1.9)
P 		1084.8
(3)
P 		474.2
(-2.9)
P 		695.6
(-0.8)
P 		464.5
(-3)
P 		775.2
(0)
P 		620
B 663.1
(2)
P 		709.8
(3)
P 		607.7
(0.8)
P 		509.2
(-1.3)
P 		431.2
(-3)
P 		645.5
(1.6)
P 		279
C 873.6
(3)
P 		832.1
(2.3)
P 		704.2
(-0.1)
P 		541.5
(-3)
P 		542
(-3)
P 		661.6
(-0.8)
P 		332
avr 704
(0.4) 		875.6
(3) 		595.4
(-1.2) 		582.1
(-1.4) 		479.2
(-3) 		694.1
(0.3) 		396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 347.2
(3)
P 		81.6
(-2.8)
P 		113.4
(-2.1)
P 		73.3
(-3)
P 		274
B 282
(3)
P 		108.3
(-2.6)
P 		94.7
(-3)
P 		108.2
(-2.6)
P 		187
C 337.9
(3)
P 		145.2
(-1.6)
P 		193.5
(-0.4)
P 		84.1
(-3)
P 		254
avr 322.4
(3) 		111.7
(-2.4) 		133.9
(-1.8) 		88.5
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 106.1
(-2.9)
P 		385.8
(3)
P 		103.3
(-3)
P 		176.4
(-1.4)
P 		140.2
(-2.2)
P 		188.7
(-1.2)
P 		283
B 230.7
(2.4)
P 		236.3
(2.8)
P 		147.6
(-2.3)
P 		134.9
(-3)
P 		175.2
(-0.7)
P 		240.7
(3)
P 		106
C 323.8
(3)
P 		253.9
(1)
P 		179.2
(-1)
P 		108.9
(-3)
P 		175.4
(-1.1)
P 		221.5
(0.1)
P 		215
avr 220.2
(0.2) 		292
(3) 		143.4
(-2.9) 		140.1
(-3) 		163.6
(-2.1) 		217
(0) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187840_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5022
Sequence Type Exemplar sequence
Representative Public ID ZK1127.9 NCBI
Target Description ZK1127.9 /REP_DB=WormBase Gene ID /WP=CE07647 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q23399 protein_id:AAB93431.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063040(11), NM_063041(11), NM_063042(11), NM_063043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063040 NCBI Caenorhabditis elegans ZK1127.6 (ZK1127.6) mRNA, complete cds. 11/11 None
NM_063041 NCBI Caenorhabditis elegans ZK1127.9b (ZK1127.9) mRNA, complete cds. 11/11 None
NM_063042 NCBI Caenorhabditis elegans ZK1127.9a (ZK1127.9) mRNA, complete cds. 11/11 None
NM_063043 NCBI Caenorhabditis elegans ZK1127.9c (ZK1127.9) mRNA, complete cds. 11/11 None
SNAP00000033587 ENSEMBL cdna:SNAP chromosome:CEL140:II:7042965:7044301:1 11/11 None
SNAP00000033588 ENSEMBL cdna:SNAP chromosome:CEL140:II:7045971:7050001:-1 11/11 None
GENEFINDER00000033600 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7045971:7050001:-1 11/11 None
GENEFINDER00000033608 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7042814:7044301:1 11/11 None
ZK1127.6.1 ENSEMBL cdna:known chromosome:CEL140:II:7042814:7044566:1 gene:ZK1127.6 11/11 None
ZK1127.6.2 ENSEMBL cdna:known chromosome:CEL140:II:7042814:7044566:1 gene:ZK1127.6 11/11 None
ZK1127.9c ENSEMBL cdna:known chromosome:CEL140:II:7045971:7048208:-1 gene:ZK1127.9 11/11 None
ZK1127.9b ENSEMBL cdna:known chromosome:CEL140:II:7045971:7050001:-1 gene:ZK1127.9 11/11 None
ZK1127.9a ENSEMBL cdna:known chromosome:CEL140:II:7045971:7050003:-1 gene:ZK1127.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182179 7/11 Cross Hyb Matching Probes None
ZK1127.9e.2 7/11 Cross Hyb Matching Probes None
ZK1127.9e.1 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174150 5 3 NM_063041 187840_s_at (11)
NM_063042 187840_s_at (11)
NM_063043 187840_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7045966-7049997(-) 95.81 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1127.6
ZK1127.9
Entrez Gene 174149 Entrez gene
SwissProt Q23398 EMBL-EBI
WormBase CE07644 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93428 Hypothetical protein ZK1127.6 [Caenorhabditis elegans] ref|NP_495441.1| ZK1127.6 [Caenorhabditis elegans] 0.0
blast AAL11107 Hypothetical protein ZK1127.9c [Caenorhabditis elegans] ref|NP_495444.1| ZK1127.9c [Caenorhabditis elegans] 0.0
blast AAK68614 Hypothetical protein ZK1127.9a [Caenorhabditis elegans] ref|NP_495443.1| ZK1127.9a [Caenorhabditis elegans] 0.0
blast AAK68615 Hypothetical protein ZK1127.9b [Caenorhabditis elegans] ref|NP_495442.1| ZK1127.9b [Caenorhabditis elegans] 0.0
blast F88196 protein ZK1127.9 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002713 EMBL-EBI FF domain 3.5E-10
Pfam IPR002713 EMBL-EBI FF domain 5.7E-16
Pfam IPR002713 EMBL-EBI FF domain 4.0E-14
Pfam IPR002713 EMBL-EBI FF domain 4.7E-13
Pfam IPR002713 EMBL-EBI FF domain 2.0E-17
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 7.0E-6
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.7E-7
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.4E-7
Pfam IPR002713 EMBL-EBI FF domain 6.0E-9
Pfam IPR002713 EMBL-EBI FF domain 2.9E-11
Pfam IPR002713 EMBL-EBI FF domain 5.7E-16
Pfam IPR002713 EMBL-EBI FF domain 4.0E-14
Pfam IPR002713 EMBL-EBI FF domain 4.7E-13
Pfam IPR002713 EMBL-EBI FF domain 9.8E-14
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 7.0E-6
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.7E-7
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.4E-7
Pfam IPR002713 EMBL-EBI FF domain 6.0E-9
Pfam IPR002713 EMBL-EBI FF domain 2.9E-11
Pfam IPR002713 EMBL-EBI FF domain 5.7E-16
Pfam IPR002713 EMBL-EBI FF domain 4.0E-14
Pfam IPR002713 EMBL-EBI FF domain 4.7E-13
Pfam IPR002713 EMBL-EBI FF domain 9.8E-14
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.7E-7
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.4E-7
Pfam IPR002713 EMBL-EBI FF domain 6.0E-9
Pfam IPR002713 EMBL-EBI FF domain 2.9E-11
Pfam IPR002713 EMBL-EBI FF domain 5.7E-16
Pfam IPR002713 EMBL-EBI FF domain 4.0E-14
Pfam IPR002713 EMBL-EBI FF domain 4.7E-13
Pfam IPR002713 EMBL-EBI FF domain 9.8E-14
Pfam IPR002713 EMBL-EBI FF domain 5.7E-16
Pfam IPR002713 EMBL-EBI FF domain 4.0E-14
Pfam IPR002713 EMBL-EBI FF domain 4.7E-13
Pfam IPR002713 EMBL-EBI FF domain 2.0E-17
Pfam IPR002713 EMBL-EBI FF domain 3.6E-5
Pfam IPR002713 EMBL-EBI FF domain 5.7E-16
Pfam IPR002713 EMBL-EBI FF domain 4.0E-14
Pfam IPR002713 EMBL-EBI FF domain 4.7E-13
Pfam IPR002713 EMBL-EBI FF domain 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:187840_S_AT
atgggcgaacacgaggatacctaccgaaatcttctaatcgatctgataaaatctaccgaa
aacagttggcacgaggctcgacgcattcttcgaaaagatgaacgctatgcaaattgtgat
atgttggataaaactcgcaaagagtcgctctttgatgatcatatcaaaagtttggaaaga
aagcgtcgtgaggctttcttccaagttctagataatcatgagaagatcacaccaatgatg
cgctggagagacgctaaaaaaatcattcaagacgaggaagagactttcgtaaaaattgct
agcaactcggagaggaaagttgagagagatttccgagattggcaggagagacggcacgat
caccttactgatgaattcaaggagatgctttctgagacaaaaatcatcacgcataagtcg
aaaaaattgatggaagaaggtgaacagcacatggatattttgtcagttctcgaaaacgat
aagagatgggtgcggatgactgctatgagtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCGAACACGAGGATACCTACC 677 49 2239 Antisense
GAGGATACCTACCGAAATCTTCTAA 257 403 2251 Antisense
AAACAGTTGGCACGAGGCTCGACGC 620 125 2298 Antisense
AGAGTCGCTCTTTGATGATCATATC 317 69 2379 Antisense
AAAGCGTCGTGAGGCTTTCTTCCAA 365 125 2418 Antisense
GAGGCTTTCTTCCAAGTTCTAGATA 582 405 2428 Antisense
AGATCACACCAATGATGCGCTGGAG 482 65 2462 Antisense
GAGAGAGATTTCCGAGATTGGCAGG 412 395 2560 Antisense
TGGCAGGAGAGACGGCACGATCACC 486 545 2578 Antisense
GGCACGATCACCTTACTGATGAATT 61 537 2591 Antisense
GGGTGCGGATGACTGCTATGAGTGC 590 497 2726 Antisense
Sequence Source Affymetrix Proprietary Database