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[187839_s_at]

Description T10B5.1 /REP_DB=WormBase Gene ID /WP=CE18239 /GB=AAC19233.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 21      6grp_total > 23      4grp_total > 10      6grp_high1_sub > 03      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 46.5
(-3)
P 		87.4
(-1.1)
P 		66.4
(-2.1)
P 		177.5
(3)
P 		131
B 64.7
(-3)
P 		82.1
(-0.3)
A 		64.7
(-3)
P 		103.4
(3)
P 		39
C 68.5
(-2.6)
P 		70.7
(-2.5)
A 		57.5
(-3)
A 		207.5
(3)
P 		150
avr 59.9
(-3) 		80.1
(-1.8) 		62.9
(-2.8) 		162.8
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 108
(1)
A 		58.7
(-2.7)
P 		133.8
(3)
P 		72.7
(-1.6)
A 		75.2
(-1.5)
P 		54.9
(-3)
A 		79
B 120.2
(3)
P 		102.6
(1.7)
P 		78.7
(-0.2)
A 		41.8
(-3)
A 		65
(-1.2)
P 		50.4
(-2.3)
P 		78
C 53.8
(-1.4)
A 		112.8
(3)
P 		43.7
(-2.1)
A 		71.5
(-0.1)
P 		31.8
(-3)
M 		40.1
(-2.4)
P 		81
avr 94
(3) 		91.4
(2.7) 		85.4
(1.9) 		62
(-1.2) 		57.3
(-1.8) 		48.5
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.9
(-3)
P 		19
(-1.6)
P 		17.4
(-2.7)
P 		26
(3)
P 		9
B 20.6
(1.8)
P 		20.3
(1.5)
A 		15
(-3)
P 		22
(3)
P 		7
C 22.7
(-2)
P 		20.3
(-2.9)
A 		20.1
(-3)
A 		35
(3)
P 		15
avr 20.1
(-1.5) 		19.9
(-1.6) 		17.5
(-3) 		27.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 19.9
(-0.5)
A 		20.9
(-0.1)
P 		29.1
(3)
P 		18.4
(-1.1)
A 		22.7
(0.6)
P 		13.4
(-3)
A 		16
B 41.8
(3)
P 		34.2
(1.5)
P 		19.1
(-1.4)
A 		11.1
(-3)
A 		26.4
(-0)
P 		18.8
(-1.5)
P 		31
C 19.9
(-0.6)
A 		34.4
(3)
P 		11.1
(-2.8)
A 		14.4
(-2)
P 		10.3
(-3)
M 		13.4
(-2.2)
P 		24
avr 27.2
(2) 		29.8
(3) 		19.8
(-0.9) 		14.6
(-3) 		19.8
(-0.9) 		15.2
(-2.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187839_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15328
Sequence Type Exemplar sequence
Representative Public ID T10B5.1 NCBI
Target Description T10B5.1 /REP_DB=WormBase Gene ID /WP=CE18239 /GB=AAC19233.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000000602 ENSEMBL cdna:SNAP chromosome:CEL140:I:14026926:14034330:1 11/11 None
GENEFINDER00000000607 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14030517:14031338:1 11/11 None
SNAP00000029126 ENSEMBL cdna:SNAP chromosome:CEL140:I:10536627:10537612:-1 11/11 None
GENEFINDER00000029135 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10536627:10537448:-1 11/11 None
GENEFINDER00000032608 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12489714:12490418:-1 11/11 None
SNAP00000006614 ENSEMBL cdna:SNAP chromosome:CEL140:II:13303073:13308852:1 11/11 None
GENEFINDER00000006656 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13308031:13308852:1 11/11 None
GENEFINDER00000006696 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12521176:12521997:1 11/11 None
SNAP00000012809 ENSEMBL cdna:SNAP chromosome:CEL140:II:7516864:7517936:-1 11/11 None
SNAP00000013023 ENSEMBL cdna:SNAP chromosome:CEL140:II:1935755:1936827:1 11/11 None
GENEFINDER00000013041 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1936006:1936827:1 11/11 None
SNAP00000016662 ENSEMBL cdna:SNAP chromosome:CEL140:II:6571434:6572506:-1 11/11 None
GENEFINDER00000016671 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6571434:6572255:-1 11/11 None
SNAP00000029310 ENSEMBL cdna:SNAP chromosome:CEL140:II:894483:895555:-1 11/11 None
GENEFINDER00000029317 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:894483:895304:-1 11/11 None
SNAP00000029510 ENSEMBL cdna:SNAP chromosome:CEL140:II:784749:785734:1 11/11 None
GENEFINDER00000029530 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:784913:785734:1 11/11 None
SNAP00000038990 ENSEMBL cdna:SNAP chromosome:CEL140:II:12750980:12752052:1 11/11 None
GENEFINDER00000039039 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12751231:12752052:1 11/11 None
SNAP00000028776 ENSEMBL cdna:SNAP chromosome:CEL140:III:12865305:12866377:-1 11/11 None
GENEFINDER00000028802 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12865305:12866377:-1 11/11 None
SNAP00000015832 ENSEMBL cdna:SNAP chromosome:CEL140:III:2119704:2120525:1 11/11 None
GENEFINDER00000015847 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2119704:2120525:1 11/11 None
SNAP00000018800 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2485383:2486018:-1 11/11 None
GENEFINDER00000018834 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2485383:2486018:-1 11/11 None
SNAP00000023383 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9685512:9686584:1 11/11 None
GENEFINDER00000023397 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9685763:9686584:1 11/11 None
SNAP00000030829 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15484327:15485399:-1 11/11 None
GENEFINDER00000030918 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15484327:15485148:-1 11/11 None
SNAP00000000584 ENSEMBL cdna:SNAP chromosome:CEL140:V:16310334:16317171:1 11/11 None
GENEFINDER00000000588 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16314882:16317335:1 11/11 None
SNAP00000008152 ENSEMBL cdna:SNAP chromosome:CEL140:V:11291541:11292613:1 11/11 None
GENEFINDER00000008164 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11291792:11292613:1 11/11 None
SNAP00000014341 ENSEMBL cdna:SNAP chromosome:CEL140:V:1834429:1835494:-1 11/11 None
SNAP00000014343 ENSEMBL cdna:SNAP chromosome:CEL140:V:1836171:1837243:1 11/11 None
GENEFINDER00000014355 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1836422:1837243:1 11/11 None
GENEFINDER00000014356 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1834422:1835243:-1 11/11 None
SNAP00000019510 ENSEMBL cdna:SNAP chromosome:CEL140:V:15909996:15911068:1 11/11 None
GENEFINDER00000019532 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15910247:15911068:1 11/11 None
SNAP00000028204 ENSEMBL cdna:SNAP chromosome:CEL140:V:3250741:3252489:-1 11/11 None
GENEFINDER00000028233 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3251327:3252238:-1 11/11 None
SNAP00000034226 ENSEMBL cdna:SNAP chromosome:CEL140:V:3590585:3594678:1 11/11 None
SNAP00000036947 ENSEMBL cdna:SNAP chromosome:CEL140:V:10187331:10192698:-1 11/11 None
GENEFINDER00000036967 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10188724:10191575:-1 11/11 None
SNAP00000042692 ENSEMBL cdna:SNAP chromosome:CEL140:V:17808647:17809719:1 11/11 None
GENEFINDER00000042701 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17808647:17809719:1 11/11 None
SNAP00000008608 ENSEMBL cdna:SNAP chromosome:CEL140:X:11311390:11312462:-1 11/11 None
GENEFINDER00000008621 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11311390:11315496:-1 11/11 None
SNAP00000027995 ENSEMBL cdna:SNAP chromosome:CEL140:X:7017452:7018524:-1 11/11 None
GENEFINDER00000028000 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7017452:7018273:-1 11/11 None
T27F6.9 ENSEMBL cdna:pseudogene chromosome:CEL140:I:12489714:12490751:-1 gene:T27F6.9 11/11 A 
T22F3.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3590334:3591399:1 gene:T22F3.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028979 1/11 Cross Hyb Matching Probes None
SNAP00000028980 5/11 Cross Hyb Matching Probes None
GENEFINDER00000028985 5/11 Cross Hyb Matching Probes None
SNAP00000015702 1/11 Cross Hyb Matching Probes None
SNAP00000033462 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034238 6/11 Cross Hyb Matching Probes None
C48D1.6 7/11 Cross Hyb Matching Probes A 
C50H2.9 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl T27F6.9
T22F3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68416 Hypothetical protein F18C5.7 [Caenorhabditis elegans] 0.0
blast F89402 protein Y94A7B.2 [imported] - Caenorhabditis elegans 0.0
blast AAB66191 Hypothetical protein T07D3.8 [Caenorhabditis elegans] 0.0
blast AAC46728 Hypothetical protein C28F5.5 [Caenorhabditis elegans] gb|AAK29917.1| Hypothetical protein Y48G9A.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003235 EMBL-EBI Nematode insulin-related peptide, beta type 7.9E-12
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.4E-30
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 7.2E-32
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 2.4E-28
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.1E-92
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.1E-10
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-33
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.4E-29
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 3.6E-28
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0017
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0017
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-34
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000000602 1 5-24
SNAP00000000584 14 20-42,70-92,105-127,156-178,492-514,534-553,566-585,605-627,651-668,717-739,746-768,788-810,817-839,1208-1230
GENEFINDER00000000588 3 350-372,387-409,422-444
Sequence
Target Sequence 
>C. ELEGANS:187839_S_AT
gctctaggtactctccaaagtatcaatgcccaaccgttaagcatggaggtgggagcgtca
tggtgtgggggtgcttcaccagcacttccatgggcccactaaggagaatccaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTAGGTACTCTCCAAAGTATCA 639 297 332 Antisense
CTCTCCAAAGTATCAATGCCCAACC 269 219 342 Antisense
AAAGTATCAATGCCCAACCGTTAAG 19 121 348 Antisense
ATCAATGCCCAACCGTTAAGCATGG 628 25 353 Antisense
GCCCAACCGTTAAGCATGGAGGTGG 213 285 359 Antisense
ATGGAGGTGGGAGCGTCATGGTGTG 538 49 374 Antisense
TGGGAGCGTCATGGTGTGGGGGTGC 556 553 381 Antisense
GAGCGTCATGGTGTGGGGGTGCTTC 126 385 384 Antisense
ATGGTGTGGGGGTGCTTCACCAGCA 259 51 391 Antisense
CACTTCCATGGGCCCACTAAGGAGA 363 197 414 Antisense
GGGCCCACTAAGGAGAATCCAAAGC 650 491 423 Antisense
Sequence Source Affymetrix Proprietary Database