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[187838_s_at]

Description Y53C10A.8 /REP_DB=WormBase Gene ID /WP=CE22376 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XW50 protein_id:CAA22141.1
Cluster 6grp_total > 96      4grp_total > 21      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 102.6
(1.3)
A 		69.7
(-0.5)
A 		25
(-3)
A 		133.8
(3)
A 		109
B 108
(3)
A 		83.5
(-0.9)
A 		93.6
(0.7)
A 		70.1
(-3)
A 		38
C 117.6
(0.1)
A 		93.7
(-1.8)
A 		77.3
(-3)
A 		156.1
(3)
A 		79
avr 109.4
(1.8) 		82.3
(-1.1) 		65.3
(-3) 		120
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 135.4
(-0.7)
A 		82.1
(-3)
A 		133.5
(-0.8)
A 		175
(1)
A 		214.2
(2.7)
A 		220.1
(3)
P 		138
B 72.6
(-3)
A 		101.7
(-1.5)
A 		119.3
(-0.7)
A 		117
(-0.8)
A 		161.6
(1.5)
A 		192.2
(3)
P 		120
C 66.4
(-3)
A 		122
(-0.9)
A 		110
(-1.3)
A 		133.4
(-0.4)
A 		142.1
(-0.1)
A 		221.8
(3)
P 		155
avr 91.5
(-3) 		101.9
(-2.5) 		120.9
(-1.5) 		141.8
(-0.5) 		172.6
(1.1) 		211.4
(3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 37.3
(3)
A 		15.1
(-1.3)
A 		6.5
(-3)
A 		19.6
(-0.4)
A 		31
B 34.4
(3)
A 		20.6
(-1.2)
A 		21.7
(-0.9)
A 		14.9
(-3)
A 		20
C 38.9
(3)
A 		26.9
(-2.7)
A 		27
(-2.7)
A 		26.3
(-3)
A 		13
avr 36.9
(3) 		20.9
(-2.2) 		18.4
(-3) 		20.3
(-2.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 25
(-3)
A 		29.2
(-2.4)
A 		29.1
(-2.4)
A 		44.4
(-0.1)
A 		64.6
(3)
A 		53.6
(1.3)
P 		40
B 25.3
(-3)
A 		33.8
(-1.9)
A 		29
(-2.5)
A 		31
(-2.3)
A 		65.7
(2.2)
A 		71.7
(3)
P 		46
C 24.6
(-3)
A 		37.2
(-1.5)
A 		28
(-2.6)
A 		26.8
(-2.7)
A 		46
(-0.4)
A 		74.3
(3)
P 		50
avr 25
(-3) 		33.4
(-1.8) 		28.7
(-2.5) 		34.1
(-1.7) 		58.8
(1.9) 		66.5
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187838_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2312
Sequence Type Exemplar sequence
Representative Public ID Y53C10A.8 NCBI
Target Description Y53C10A.8 /REP_DB=WormBase Gene ID /WP=CE22376 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XW50 protein_id:CAA22141.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000696 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12015033:12017747:1 11/11 None
Y53C10A.14 ENSEMBL cdna:pseudogene chromosome:CEL140:I:12016613:12017747:1 gene:Y53C10A.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000688 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12014963-12017678(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y53C10A.14
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27120 hypothetical protein Y53C10A.8 - Caenorhabditis elegans 0.0
blast T27122 hypothetical protein Y53C10A.7 - Caenorhabditis elegans 7.0E-32
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-13
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.9E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.7E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.2E-11
Sequence
Target Sequence 
>C. ELEGANS:187838_S_AT
gtcgatctaccgattcatgtcgtccagagaattatggaaaaggtggaaccgagcgataga
ttgtctgtccgaaaagtcaatcgaaatctccgccaactcattgatgaaatggatcctgga
tttagaagtatttcagttaatatttctacgcgaaacggtgcctttgtttcctttggccat
ggttgccgtgttcactacgatcaagtgctaaatgactgcgaaatttattatcaaaaggag
aagaagaagttcatcaatgaaaatgctgtaagaatggcaatgaatgacgtcatcagagta
atgagtcatcctaattcaaaggtggacatgttcgcaactggaattttaacaaaacgcgag
atgagtctccctggaaccgaagcagaagttatgagctgtgttgatatcatggtcagaaag
ctccgctcatccaaatttccaaatattctcttggagtctgaaaaaatcgagaaagtttcc
ttccgctcgcactttgatgtcaaaatcgatgttgttcgcgtttttattccgaacgctgcc
aatgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGATCTACCGATTCATGTCGTCC 425 473 793 Antisense
TTCTACGCGAAACGGTGCCTTTGTT 238 683 936 Antisense
TTTGTTTCCTTTGGCCATGGTTGCC 49 667 955 Antisense
TGGTTGCCGTGTTCACTACGATCAA 436 551 972 Antisense
CAAAGGTGGACATGTTCGCAACTGG 321 193 1109 Antisense
AAAACGCGAGATGAGTCTCCCTGGA 415 131 1143 Antisense
GTCTCCCTGGAACCGAAGCAGAAGT 705 465 1157 Antisense
TCATGGTCAGAAAGCTCCGCTCATC 654 621 1199 Antisense
TCGAGAAAGTTTCCTTCCGCTCGCA 554 601 1259 Antisense
TCCGCTCGCACTTTGATGTCAAAAT 8 597 1274 Antisense
TTATTCCGAACGCTGCCAATGTGAA 139 679 1316 Antisense
Sequence Source Affymetrix Proprietary Database