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[187836_s_at]

Description C24H12.5 /REP_DB=WormBase Gene ID /WP=CE08359 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O17156 protein_id:AAB71201.1
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 45      6grp_total > 97      4grp_total > 50      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 127.8
(-2.3)
P 		258
(3)
P 		205.2
(0.9)
P 		110
(-3)
A 		148
B 145.4
(-1.3)
P 		190.1
(0.6)
P 		246.1
(3)
P 		104.1
(-3)
P 		142
C 112.8
(-3)
P 		245.4
(3)
P 		185.7
(0.3)
P 		124
(-2.5)
P 		133
avr 128.7
(-2.2) 		231.2
(3) 		212.3
(2) 		112.7
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 84.4
(-3)
A 		97.7
(-2.7)
P 		97.9
(-2.7)
P 		143.2
(-1.7)
P 		230.1
(0.1)
P 		362.1
(3)
P 		278
B 141.2
(-2.1)
P 		116.1
(-2.9)
P 		112.6
(-3)
P 		121.9
(-2.7)
P 		230.7
(0.7)
P 		305.6
(3)
P 		193
C 113.7
(-2.6)
P 		97.1
(-3)
P 		109
(-2.7)
P 		153.4
(-1.6)
P 		251.4
(0.8)
P 		341
(3)
P 		244
avr 113.1
(-2.8) 		103.6
(-3) 		106.5
(-2.9) 		139.5
(-2.1) 		237.4
(0.5) 		336.2
(3) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 46.5
(1.6)
P 		56
(3)
P 		53.7
(2.7)
P 		16.1
(-3)
A 		40
B 46.4
(1.2)
P 		47
(1.3)
P 		57
(3)
P 		22.2
(-3)
P 		35
C 37.3
(-1)
P 		70.6
(3)
P 		64.7
(2.3)
P 		20.9
(-3)
P 		50
avr 43.4
(0.7) 		57.9
(2.9) 		58.5
(3) 		19.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 15.6
(-3)
A 		34.8
(-1.4)
P 		21.3
(-2.5)
P 		36.3
(-1.3)
P 		69.4
(1.4)
P 		88.2
(3)
P 		73
B 49.1
(-1.5)
P 		38.6
(-2.2)
P 		27.3
(-3)
P 		32.3
(-2.7)
P 		93.7
(1.6)
P 		114
(3)
P 		87
C 42.2
(-2)
P 		29.6
(-2.9)
P 		27.7
(-3)
P 		30.8
(-2.8)
P 		81.3
(0.7)
P 		114.2
(3)
P 		87
avr 35.6
(-2.2) 		34.3
(-2.3) 		25.4
(-3) 		33.1
(-2.4) 		81.5
(1.2) 		105.5
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187836_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5320
Sequence Type Exemplar sequence
Representative Public ID C24H12.5 NCBI
Target Description C24H12.5 /REP_DB=WormBase Gene ID /WP=CE08359 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O17156 protein_id:AAB71201.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061325(11), NM_061326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061325 NCBI Caenorhabditis elegans C24H12.5b (C24H12.5) mRNA, complete cds. 11/11 None
NM_061326 NCBI Caenorhabditis elegans C24H12.5a (C24H12.5) mRNA, complete cds. 11/11 None
SNAP00000023825 ENSEMBL cdna:SNAP chromosome:CEL140:II:406226:416630:-1 11/11 None
GENEFINDER00000023839 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:406226:410918:-1 11/11 None
C24H12.5b ENSEMBL cdna:known chromosome:CEL140:II:406140:410918:-1 gene:C24H12.5 11/11 None
C24H12.5a ENSEMBL cdna:known chromosome:CEL140:II:406226:410927:-1 gene:C24H12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:406225-410918(-) 100.0 100.0
Public Domain and Genome References
Ensembl C24H12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68202 Hypothetical protein C24H12.5b [Caenorhabditis elegans] ref|NP_493726.1| C24H12.5b [Caenorhabditis elegans] 0.0
blast AAB71201 Hypothetical protein C24H12.5a [Caenorhabditis elegans] ref|NP_493727.1| C24H12.5a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187836_S_AT
aaattccgatgaaagcccgctgaaaaaagatcaagacagtgatgagaacgagagtccaat
gaagctggcgaaccaatggttgaatgagattggggtctcaccgcgaacagtgaaaaatac
tgtttcgagagaactctcttcccaagtgactgatcgtgccggtttccagtgtcttgtagt
ccatggctccaagattcatgctctattcaacgcgctgatggattcggacgttgtacacga
gaaaacgggtccctacacgaaaatcccgcccactctaatcgccacgtcaccatttttgta
tgggcagttgctcagcttgacgaaatcatcgaatatattcgcaaaagccggaaccaagtg
cacggaatacgagctgaagctggaaaatggtccagtgctcccgcattgtgcaaaaatgat
gacccagttcatccgctctacgaacatgtgctcgacggaggagaagccggtaacaatgca
agtcatggatcgacatacgagtcaaggaatgtctgattggacggaaactgccaccaactg
gaatactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCCGATGAAAGCCCGCTGAAA 589 115 1257 Antisense
TGAGATTGGGGTCTCACCGCGAACA 522 551 1341 Antisense
GTTTCGAGAGAACTCTCTTCCCAAG 268 451 1378 Antisense
TCTTCCCAAGTGACTGATCGTGCCG 546 615 1393 Antisense
CCAGTGTCTTGTAGTCCATGGCTCC 146 273 1422 Antisense
ATGGCTCCAAGATTCATGCTCTATT 546 53 1439 Antisense
TTCATGCTCTATTCAACGCGCTGAT 222 689 1451 Antisense
CGCGCTGATGGATTCGGACGTTGTA 96 255 1467 Antisense
GTATGGGCAGTTGCTCAGCTTGACG 72 455 1554 Antisense
CGCTCTACGAACATGTGCTCGACGG 321 255 1690 Antisense
GAAACTGCCACCAACTGGAATACTG 556 357 1780 Antisense
Sequence Source Affymetrix Proprietary Database